Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 4.1e-99 364.8 188 100.0
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-72 276.2 150 95.3
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 1.9e-72 276.2 150 95.3
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-66 255.4 181 75.1
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-66 255.4 181 75.1
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-58 229.9 161 75.8
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-53 213.0 176 64.2
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 1.7e-52 209.9 180 64.4
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 4.9e-52 208.4 180 63.9
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-51 206.5 181 61.9
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-50 202.2 179 60.3
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-50 202.2 185 60.5
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-49 199.9 185 60.0
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 5.2e-46 188.3 150 65.3
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-45 186.4 178 59.0
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-44 183.3 164 60.4
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-43 180.6 146 66.4
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-43 180.3 139 69.8
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-43 179.9 177 55.9
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-43 178.7 169 54.4
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 5.4e-43 178.3 177 56.5
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 7.0e-43 177.9 177 55.9
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 1.2e-42 177.2 151 62.3
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-41 174.1 181 56.4
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 2.3e-41 172.9 177 54.2
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.5e-40 170.2 177 54.2
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 4.3e-40 168.7 179 53.1
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 6.2e-39 164.9 160 55.0
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 2.0e-37 159.8 176 49.4
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-37 159.5 176 49.4
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-37 157.9 177 52.0
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-37 157.9 177 52.5
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-36 156.8 136 64.7
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 3.7e-36 155.6 177 50.3
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-35 152.1 177 50.3
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.1e-35 151.4 174 50.6
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 7.1e-35 151.4 176 50.6
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-35 151.0 169 50.3
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-33 146.7 173 46.2
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 2.3e-33 146.4 161 52.8
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-32 144.1 173 47.4
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 1.5e-32 143.7 170 50.0
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.9e-32 143.3 175 49.1
RcHm_v2.0_Chr7g0236221 Rosa chinensis HOM05D002804 ORTHO05D341151 1.2e-31 140.6 103 69.9
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 6.2e-31 138.3 174 48.9
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-30 137.5 174 48.3
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-30 137.5 174 48.3
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-30 136.7 155 49.7
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-30 136.3 177 48.6
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 2.4e-30 136.3 177 49.2
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 8.9e-30 134.4 162 52.5
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 2.0e-29 133.3 162 49.4
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-28 129.8 111 65.8
FAN18G0121 Fragaria x ananassa HOM05D002804 ORTHO05D029665 6.4e-28 128.3 177 44.1
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 8.4e-28 127.9 148 51.4
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-27 126.3 171 44.4
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 7.8e-26 121.3 108 63.9
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-25 119.8 71 87.3
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.6e-25 117.9 122 54.9
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.6e-25 117.9 171 45.0
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 8.6e-25 117.9 97 63.9
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-24 117.5 153 45.1
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 2.5e-24 116.3 176 42.0
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-24 116.3 83 68.7
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-23 112.5 173 42.2
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-22 109.8 169 42.0
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 4.0e-22 109.0 158 43.0
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 5.2e-22 108.6 126 48.4
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 9.0e-22 107.8 173 39.3
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 7.6e-21 104.8 79 70.9
FAN08G0149 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.7e-20 103.6 126 49.2
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-20 102.4 117 52.1
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-19 100.9 171 40.9
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 2.7e-18 96.3 92 57.6
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 2.7e-18 96.3 92 57.6
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 1.7e-17 93.6 114 44.7
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 3.9e-17 92.4 71 71.8
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 3.9e-17 92.4 143 42.0
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 5.1e-17 92.0 119 47.9
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-16 90.5 135 44.4
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 1.9e-16 90.1 135 44.4
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 1.9e-16 90.1 123 45.5
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-16 89.7 145 39.3
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 5.6e-16 88.6 143 40.6
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 5.6e-16 88.6 165 37.0
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 9.6e-16 87.8 127 42.5
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-16 87.8 127 42.5
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-16 87.8 173 34.7
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 9.6e-16 87.8 138 39.9
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-15 87.4 143 39.9
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-15 87.4 129 41.1
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-15 87.0 71 70.4
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-15 87.0 143 39.9
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 2.1e-15 86.7 167 37.1
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 2.1e-15 86.7 167 37.1
FAN04G3233 Fragaria x ananassa HOM05D002804 ORTHO05D025426 3.6e-15 85.9 123 48.0
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-15 85.5 127 41.7
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-14 83.6 143 38.5
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-14 82.0 127 40.9
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.9e-14 81.6 126 38.9
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 4.5e-13 79.0 100 47.0
FvH4_5g31001 Fragaria vesca HOM05D002804 ORTHO05D003755 5.8e-13 78.6 57 68.4
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.8e-13 78.6 118 42.4
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 7.6e-13 78.2 125 37.6
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 9.9e-13 77.8 113 42.5
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-12 76.6 123 39.0
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-12 76.6 129 38.0
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-12 75.9 139 35.3
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 4.9e-12 75.5 99 41.4
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 1.1e-11 74.3 71 54.9
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.4e-11 73.9 101 44.6
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.9e-11 73.6 99 41.4
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 2.4e-11 73.2 147 31.3
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 2.4e-11 73.2 126 34.9
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 2.4e-11 73.2 139 33.1
FAN10G1025 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-11 72.4 107 43.9
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 4.2e-11 72.4 102 45.1
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 5.4e-11 72.0 117 39.3
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 5.4e-11 72.0 99 40.4
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 7.1e-11 71.6 146 38.4
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 7.1e-11 71.6 112 38.4
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.3e-11 71.2 135 35.6
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 2.1e-10 70.1 88 42.0
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 2.1e-10 70.1 132 34.8
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.7e-10 69.7 138 35.5
RcHm_v2.0_Chr7g0236041 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-10 69.3 116 37.1
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 3.5e-10 69.3 138 32.6
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 4.6e-10 68.9 95 41.1
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 4.6e-10 68.9 71 52.1
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 6.0e-10 68.6 101 40.6
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 7.9e-10 68.2 119 37.8
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 7.9e-10 68.2 132 38.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.8e-09 67.0 121 38.0
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.8e-09 67.0 88 43.2
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-09 67.0 133 38.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 3.9e-09 65.9 83 42.2
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-09 65.9 97 42.3
FAN13G0906 Fragaria x ananassa HOM05D002804 ORTHO05D208549 6.7e-09 65.1 69 49.3
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.7e-09 64.7 98 39.8
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.9e-08 63.5 112 36.6
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-08 63.5 89 41.6
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.5e-08 63.2 128 36.7
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 2.5e-08 63.2 71 49.3
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 3.3e-08 62.8 144 34.0
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-08 62.8 94 41.5
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 4.3e-08 62.4 164 31.1
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.3e-08 62.4 99 42.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 4.3e-08 62.4 114 37.7
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 5.6e-08 62.0 99 36.4
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 7.4e-08 61.6 97 39.2
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 9.6e-08 61.2 82 45.1
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 9.6e-08 61.2 111 36.0
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-07 60.5 71 46.5
RcHm_v2.0_Chr0c11g0499521 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-07 60.1 64 57.8
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-07 60.1 127 33.9
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.2e-07 58.5 115 35.7
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.1e-07 58.2 144 35.4
FAN08G3093 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.1e-07 58.2 31 87.1
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.1e-07 58.2 66 48.5
RcHm_v2.0_Chr7g0236001 Rosa chinensis HOM05D002804 ORTHO05D341774 1.4e-06 57.4 64 56.2
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-06 56.6 66 47.0
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 5.3e-06 55.5 101 34.7
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 6.9e-06 55.1 101 33.7


User provided reference genes

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