Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 6.8e-125 450.7 226 100.0
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 6.8e-125 450.7 226 100.0
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 2.2e-75 286.2 203 70.9
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-59 234.2 214 57.5
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 6.5e-59 231.5 213 55.4
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-58 230.3 214 54.7
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 5.1e-56 221.9 212 55.7
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-56 221.5 215 55.8
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 8.7e-56 221.1 215 55.3
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 8.7e-56 221.1 214 53.7
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-55 217.6 215 56.3
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-54 215.7 215 54.0
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-54 215.7 215 54.0
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-53 214.2 214 58.4
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-53 212.2 206 56.8
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 2.0e-52 209.9 214 52.8
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-52 209.1 214 53.3
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.5e-51 204.9 206 54.9
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-50 203.8 214 51.9
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-50 203.4 214 51.4
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.2e-50 201.4 214 49.5
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 3.5e-49 199.1 214 48.6
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.1e-49 198.4 216 51.4
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-48 196.1 214 50.0
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 3.3e-47 192.6 214 48.1
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-46 188.0 212 53.8
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-45 187.6 176 54.0
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-45 186.4 215 50.7
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-44 184.1 193 54.4
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 3.8e-43 179.1 215 48.8
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 8.5e-43 177.9 214 48.1
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-42 176.4 215 47.9
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-42 175.6 214 48.6
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-40 168.3 215 48.8
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.7e-39 165.2 191 50.3
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-38 164.1 187 50.8
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-38 163.3 195 49.7
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 4.8e-38 162.2 215 45.6
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 1.4e-37 160.6 90 85.6
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-37 160.2 213 46.5
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-37 159.8 219 43.4
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 7.7e-36 154.8 201 45.8
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-35 152.9 196 44.4
FvH4_5g31001 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-34 151.0 178 50.0
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 1.1e-34 151.0 214 41.1
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-34 150.2 223 39.0
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-32 144.1 203 44.3
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-32 142.5 201 39.3
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 6.7e-32 141.7 214 40.2
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 4.4e-31 139.0 91 78.0
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-30 137.5 100 70.0
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-30 136.7 205 39.0
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 3.7e-30 136.0 214 41.1
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 8.2e-30 134.8 201 38.3
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 5.3e-29 132.1 214 40.2
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-29 132.1 212 37.7
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 9.1e-29 131.3 102 65.7
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-28 131.0 201 38.3
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-28 131.0 201 38.3
FAN04G3233 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.1e-26 124.4 230 37.8
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-23 114.4 94 57.4
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.5e-23 114.0 214 33.6
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-23 112.8 124 50.0
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 7.5e-23 111.7 103 54.4
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 8.2e-22 108.2 148 47.3
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-22 108.2 212 34.0
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-19 100.5 143 44.1
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 2.2e-19 100.1 97 57.7
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 5.0e-19 99.0 175 34.9
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 1.1e-18 97.8 92 57.6
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 1.5e-18 97.4 97 55.7
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 4.7e-17 92.4 103 49.5
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-16 90.9 103 49.5
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-16 89.7 103 46.6
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-16 89.4 103 48.5
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 6.8e-16 88.6 86 54.7
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.8e-16 88.6 103 47.6
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-15 87.8 103 47.6
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-15 87.8 194 32.5
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-15 87.4 103 44.7
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.4e-15 85.9 103 43.7
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 7.5e-15 85.1 94 52.1
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 7.5e-15 85.1 103 43.7
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-15 85.1 103 43.7
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 9.8e-15 84.7 57 70.2
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-14 84.3 256 28.5
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 2.2e-14 83.6 103 45.6
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-14 82.4 186 31.7
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-14 82.0 105 42.9
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 8.3e-14 81.6 105 42.9
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-13 81.3 152 33.6
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-13 80.9 90 48.9
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 1.4e-13 80.9 104 45.2
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-13 80.5 108 43.5
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-13 80.5 108 43.5
FAN26G3455 Fragaria x ananassa HOM05D002804 ORTHO05D011158 1.8e-13 80.5 90 48.9
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-13 80.1 197 31.0
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 2.4e-13 80.1 104 45.2
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 3.1e-13 79.7 104 45.2
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 9.1e-13 78.2 104 44.2
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 9.1e-13 78.2 104 44.2
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 9.1e-13 78.2 104 44.2
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 3.5e-12 76.3 103 40.8
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-12 75.9 56 66.1
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-12 75.9 87 48.3
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 4.5e-12 75.9 104 40.4
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 5.9e-12 75.5 56 66.1
FAN08G3093 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-12 75.5 87 49.4
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 5.9e-12 75.5 104 42.3
FAN10G1025 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-11 74.7 102 43.1
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-11 73.9 142 38.0
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.2e-11 73.6 104 43.3
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-11 73.6 104 40.4
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-11 73.2 255 26.3
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 2.9e-11 73.2 105 42.9
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-11 72.8 56 62.5
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 3.8e-11 72.8 104 42.3
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-10 71.2 96 43.8
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 2.5e-10 70.1 102 38.2
RcHm_v2.0_Chr7g0236621 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-10 70.1 42 81.0
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-10 69.3 58 55.2
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 5.5e-10 68.9 103 36.9
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 5.5e-10 68.9 97 41.2
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-09 67.8 53 62.3
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-09 67.8 91 44.0
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-09 66.6 148 27.7
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 4.7e-09 65.9 103 35.9
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 8.0e-09 65.1 73 46.6
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 8.0e-09 65.1 103 35.0
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-08 64.3 96 38.5
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 1.4e-08 64.3 101 38.6
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-08 63.5 107 39.3
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-08 63.5 85 42.4
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 3.0e-08 63.2 100 40.0
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 5.2e-08 62.4 101 35.6
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 5.2e-08 62.4 103 35.9
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 5.2e-08 62.4 37 75.7
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 5.2e-08 62.4 106 35.8
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 8.8e-08 61.6 62 58.1
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 8.8e-08 61.6 105 37.1
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 8.8e-08 61.6 73 45.2
FvH4_6g08910 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-07 61.2 88 37.5
FAN18G0121 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.2e-07 61.2 103 36.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.5e-07 60.8 103 33.0
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 2.0e-07 60.5 102 35.3
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-07 60.5 103 35.9
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 2.0e-07 60.5 103 37.9
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 2.0e-07 60.5 103 35.0
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-07 59.7 56 51.8
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-07 59.7 97 37.1
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 4.4e-07 59.3 106 37.7
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 5.7e-07 58.9 103 35.9
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 5.7e-07 58.9 103 34.0
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 5.7e-07 58.9 103 34.0
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 7.5e-07 58.5 103 34.0
FAN18G3459 Fragaria x ananassa HOM05D002804 ORTHO05D210854 1.3e-06 57.8 39 66.7
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-06 57.8 103 35.0
FvH4_6g08812 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-06 57.4 93 34.4
RcHm_v2.0_Chr3g0459121 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-06 57.4 70 41.4
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 2.2e-06 57.0 77 41.6
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 2.2e-06 57.0 103 35.0
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-06 56.2 103 35.9
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 3.7e-06 56.2 103 34.0
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.9e-06 55.8 56 46.4
RcHm_v2.0_Chr0c11g0499521 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-06 55.8 53 52.8
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-06 55.5 105 36.2
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 8.3e-06 55.1 103 33.0


User provided reference genes

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