Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 4.6e-77 291.2 151 100.0
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-61 240.0 151 84.1
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-61 239.6 151 83.4
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-61 239.6 151 83.4
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 2.7e-61 238.8 147 83.7
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 4.6e-61 238.0 147 82.3
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 4.6e-61 238.0 147 82.3
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 3.9e-60 235.0 147 81.6
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 8.7e-60 233.8 147 81.6
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 8.7e-60 233.8 147 81.6
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 2.5e-59 232.3 147 83.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 9.6e-59 230.3 143 80.4
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 2.8e-58 228.8 149 81.2
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 4.8e-58 228.0 147 81.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-57 226.5 147 81.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-57 226.5 147 81.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-57 226.5 147 81.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-57 226.5 147 81.0
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.8e-57 226.1 148 81.8
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 4.0e-57 224.9 147 81.0
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 6.9e-57 224.2 150 80.7
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-56 222.6 147 79.6
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.8e-56 221.1 145 79.3
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 2.2e-55 219.2 147 76.2
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 2.9e-55 218.8 143 78.3
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.5 147 75.5
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.9e-54 216.1 141 80.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.2e-53 213.4 147 74.8
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.7e-53 212.2 145 78.6
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 7.9e-53 210.7 147 74.8
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.0e-52 208.8 145 76.6
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 3.9e-52 208.4 150 74.7
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.1e-51 206.8 159 72.3
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 3.3e-51 205.3 150 72.7
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 9.6e-51 203.8 147 74.8
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 1.3e-50 203.4 150 72.0
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 1.3e-50 203.4 150 72.0
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 1.3e-50 203.4 150 72.0
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 1.3e-50 203.4 150 72.0
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 1.3e-50 203.4 150 72.0
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 2.1e-50 202.6 148 72.3
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 2.8e-50 202.2 149 72.5
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.8e-49 199.5 148 70.9
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-47 191.4 149 68.5
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 1.9e-46 189.5 128 75.8
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.1e-42 176.0 138 72.5
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 3.7e-42 175.3 96 87.5
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-41 173.7 105 82.9
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-41 173.3 111 74.8
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-39 167.2 147 63.3
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.9e-39 165.6 108 74.1
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 1.1e-38 163.7 103 76.7
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.2e-38 161.0 105 75.2
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 6.1e-37 157.9 91 87.9
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 5.1e-36 154.8 95 83.2
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 9.7e-35 150.6 96 77.1
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.8e-34 149.1 109 73.4
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.6e-32 142.5 110 68.2
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.5e-32 141.7 91 75.8
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.5e-32 141.7 91 75.8
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.5e-32 141.7 91 75.8
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.5e-32 141.7 91 75.8
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.5e-32 141.7 91 75.8
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 5.0e-31 138.3 117 69.2
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-27 126.3 147 51.7
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 8.2e-26 120.9 97 63.9
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.3e-23 113.6 74 77.0
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.9e-23 112.5 105 57.1
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.4e-22 110.2 74 75.7
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 1.6e-21 106.7 65 84.6
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 2.7e-21 105.9 83 67.5
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.4e-20 103.6 140 42.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 4.4e-19 98.6 53 92.5
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 1.0e-15 87.4 71 66.2
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.2e-15 86.3 55 72.7
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 2.2e-15 86.3 49 85.7
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 5.5e-14 81.6 106 39.6
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.6e-13 80.1 97 43.3
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 6.1e-13 78.2 68 60.3
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-12 77.4 71 57.7
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.3e-12 76.3 47 80.9
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.0e-12 75.5 47 78.7
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 9.7e-11 70.9 47 74.5
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.1e-09 67.4 44 75.0
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 7.0e-09 64.7 56 60.7
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 1.3e-07 60.5 101 40.6


User provided reference genes

Program Settings