Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 1.8e-45 185.7 102 100.0
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 1.8e-45 185.7 102 100.0
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 2.0e-44 182.2 100 99.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 2.6e-44 181.8 102 96.1
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.5e-44 181.4 102 97.1
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.0e-43 179.9 102 97.1
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.0e-43 179.9 102 97.1
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.0e-43 179.9 102 97.1
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.0e-43 179.9 102 97.1
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 1.3e-43 179.5 102 98.0
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 1.7e-43 179.1 102 98.0
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 2.2e-43 178.7 102 96.1
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 2.9e-43 178.3 102 97.1
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 5.0e-43 177.6 102 94.1
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 102 95.1
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 102 95.1
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 102 95.1
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 102 95.1
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 102 95.1
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 102 95.1
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-42 176.4 101 95.0
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-42 176.4 101 95.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-42 176.4 101 95.0
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 1.9e-42 175.6 102 96.1
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.9e-42 175.6 102 96.1
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.9e-42 175.6 102 96.1
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.2e-42 173.7 102 94.1
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 7.2e-42 173.7 102 95.1
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 7.2e-42 173.7 102 95.1
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 7.2e-42 173.7 102 95.1
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 9.4e-42 173.3 102 93.1
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.2e-41 172.9 102 93.1
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.2e-41 172.9 102 95.1
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 1.8e-40 169.1 102 95.1
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 2.3e-40 168.7 102 91.2
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 6.7e-40 167.2 102 90.2
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 1.5e-39 166.0 102 90.2
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 2.0e-39 165.6 102 91.2
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 91.2
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 88.2
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 88.2
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 6.3e-38 160.6 102 87.3
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 8.2e-38 160.2 93 91.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 8.2e-38 160.2 93 91.4
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 1.4e-37 159.5 92 93.5
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 1.4e-37 159.5 92 93.5
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 4.1e-37 157.9 101 86.1
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-36 156.4 102 85.3
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 1.3e-35 152.9 98 82.7
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 1.1e-34 149.8 102 81.4
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.0e-32 143.3 95 84.2
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 3.0e-32 141.7 102 83.3
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 3.0e-32 141.7 102 83.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.2e-31 139.8 91 86.8
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.3e-30 136.3 82 89.0
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 2.2e-30 135.6 95 80.0
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 2.0e-28 129.0 102 78.4
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 9.5e-26 120.2 102 72.5
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-24 115.9 101 71.3
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-24 115.9 66 90.9
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 8.9e-24 113.6 66 89.4
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-23 112.5 66 87.9
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 3.4e-23 111.7 104 67.3
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 4.4e-23 111.3 62 91.9
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 3.7e-22 108.2 75 84.0
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 6.3e-22 107.5 67 82.1
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 1.1e-21 106.7 65 84.6
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 2.4e-21 105.5 74 81.1
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 5.4e-21 104.4 76 80.3
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 1.2e-20 103.2 77 76.6
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 2.7e-20 102.1 67 82.1
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 2.3e-19 99.0 59 84.7
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 2.3e-19 99.0 62 88.7
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 8.6e-19 97.1 59 89.8
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.5e-18 96.3 56 89.3
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 3.3e-18 95.1 96 64.6
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 3.3e-18 95.1 54 88.9
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 5.6e-18 94.4 77 74.0
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 7.3e-18 94.0 75 74.7
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 2.8e-17 92.0 73 67.1
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 2.3e-16 89.0 52 88.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 2.3e-16 89.0 52 88.5
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 8.9e-16 87.0 51 88.2
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 3.4e-15 85.1 102 57.8
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 5.8e-15 84.3 53 86.8
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 9.8e-15 83.6 51 86.3
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.7e-14 82.8 48 95.8
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 7.0e-13 77.4 100 50.0
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 6.0e-12 74.3 51 76.5
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 8.6e-11 70.5 41 85.4
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 6.8e-08 60.8 41 78.0
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 2.9e-06 55.5 43 60.5
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 3.7e-06 55.1 89 40.4
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 3.7e-06 55.1 89 40.4
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 3.7e-06 55.1 89 40.4
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 4.9e-06 54.7 32 78.1
ClCG00G001520 Citrullus lanatus HOM05D001200 ORTHO05D150238 8.3e-06 53.9 29 100.0


User provided reference genes

Program Settings