Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 2.7e-89 332.0 177 100.0
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 2.7e-89 332.0 177 100.0
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 4.4e-87 324.7 177 98.3
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.8e-80 302.8 177 91.0
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.8e-80 302.8 177 91.0
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.8e-80 302.8 177 91.0
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 3.0e-80 302.0 177 91.0
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.4e-79 298.1 177 89.8
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 7.5e-79 297.4 177 88.7
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.2e-78 295.8 177 88.7
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 87.0
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 7.0e-77 290.8 177 87.6
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 7.0e-77 290.8 177 87.6
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 7.0e-77 290.8 177 87.6
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 7.0e-77 290.8 177 87.6
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 1.6e-76 289.7 177 87.0
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 7.8e-76 287.3 177 84.2
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 1.3e-75 286.6 177 86.4
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 1.3e-75 286.6 177 86.4
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 2.3e-75 285.8 177 85.9
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.5e-74 283.1 176 85.2
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 2.5e-74 282.3 177 84.7
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 3.3e-74 282.0 176 85.2
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 9.5e-74 280.4 177 84.7
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 9.5e-74 280.4 177 84.7
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 1.6e-73 279.6 177 83.6
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 1.6e-73 279.6 177 83.6
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 2.1e-73 279.3 177 84.2
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 83.6
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 2.3e-72 275.8 177 83.1
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 4.0e-72 275.0 177 85.3
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 4.0e-72 275.0 177 84.2
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 2.6e-71 272.3 177 82.5
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.4e-69 264.6 153 89.5
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-68 263.5 176 81.8
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 3.5e-68 261.9 177 79.1
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.0e-67 260.4 177 79.7
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.0e-67 258.8 153 86.9
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 5.6e-66 254.6 162 84.0
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.4e-61 239.2 152 84.9
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.9e-54 214.9 161 75.8
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 8.3e-54 214.2 141 80.1
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.4e-53 213.4 137 82.5
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 4.3e-50 201.8 129 82.9
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 7.1e-45 184.5 118 78.8
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 2.1e-44 183.0 124 78.2
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 6.2e-41 171.4 110 81.8
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-40 170.6 117 75.2
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 1.4e-40 170.2 99 85.9
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.4e-40 169.5 99 85.9
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 2.4e-40 169.5 99 86.9
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 3.1e-40 169.1 107 83.2
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 3.1e-40 169.1 107 83.2
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 3.1e-40 169.1 107 83.2
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 4.0e-40 168.7 111 80.2
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 9.0e-40 167.5 119 75.6
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 9.9e-39 164.1 163 58.9
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 9.3e-37 157.5 99 81.8
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 1.2e-36 157.1 180 57.8
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 1.3e-35 153.7 99 81.8
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 2.5e-34 149.4 128 65.6
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 2.5e-34 149.4 93 81.7
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 3.3e-34 149.1 153 62.1
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 7.3e-34 147.9 98 80.6
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 8.1e-33 144.4 100 79.0
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 1.4e-32 143.7 84 91.7
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 1.8e-32 143.3 109 73.4
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.4e-32 142.9 94 76.6
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 8.4e-30 134.4 84 85.7
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-29 134.0 96 71.9
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 9.3e-29 131.0 74 82.4
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 9.3e-29 131.0 74 82.4
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 6.0e-28 128.3 75 89.3
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.0e-27 127.5 90 80.0
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 3.3e-26 122.5 84 79.8
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-25 119.4 75 88.0
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 1.4e-24 117.1 75 76.0
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 2.4e-24 116.3 62 96.8
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 3.4e-23 112.5 67 79.1
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 2.5e-21 106.3 176 44.3
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 3.2e-21 105.9 73 79.5
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 3.2e-21 105.9 73 79.5
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 3.2e-21 105.9 73 79.5
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 1.2e-20 104.0 83 72.3
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 9.6e-18 94.4 65 76.9
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 1.8e-16 90.1 56 80.4
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 2.0e-15 86.7 99 47.5
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 4.5e-15 85.5 87 65.5
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 2.9e-14 82.8 84 61.9
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 1.9e-13 80.1 61 75.4
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 1.9e-13 80.1 48 87.5
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 3.3e-10 69.3 70 58.6
Haze_02268 Corylus avellana HOM05D007371 ORTHO05D009319 4.3e-10 68.9 43 79.1
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 7.4e-10 68.2 45 75.6
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 2.0e-07 60.1 60 53.3


User provided reference genes

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