Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 2.5e-84 315.5 168 100.0
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 1.3e-83 313.2 168 99.4
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.9e-79 299.3 165 96.4
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.4e-79 298.9 165 95.8
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.9
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-78 294.7 165 93.9
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 4.6e-78 294.7 165 93.9
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 4.6e-78 294.7 165 93.9
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 4.6e-78 294.7 165 93.9
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 4.6e-78 294.7 165 93.9
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 4.6e-78 294.7 165 93.9
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 4.6e-78 294.7 167 93.4
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 4.6e-78 294.7 167 93.4
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 6.0e-78 294.3 166 92.8
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 6.0e-78 294.3 166 92.8
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 7.9e-78 293.9 166 92.8
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-77 292.4 166 92.2
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.3e-77 292.4 166 93.4
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.3e-77 292.4 166 93.4
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 6.7e-77 290.8 165 93.3
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 1.5e-76 289.7 165 92.1
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 2.5e-76 288.9 158 97.5
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 3.3e-76 288.5 168 92.3
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 3.3e-76 288.5 168 92.3
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 3.3e-76 288.5 168 92.3
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 3.3e-76 288.5 168 92.3
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 3.3e-76 288.5 168 92.3
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 3.3e-76 288.5 168 92.3
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.3e-76 288.5 165 92.7
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.3e-76 288.5 165 92.7
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 9.6e-76 287.0 166 91.6
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 95.6
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.6e-75 286.2 158 95.6
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 95.6
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 95.6
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 94.9
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 94.9
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 94.9
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 4.8e-75 284.6 157 94.9
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 8.1e-75 283.9 158 95.6
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 8.1e-75 283.9 158 95.6
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 8.1e-75 283.9 158 94.3
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 8.1e-75 283.9 167 81.4
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.4e-74 282.3 167 90.4
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 3.1e-74 282.0 162 91.4
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 3.1e-74 282.0 162 91.4
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 2.0e-73 279.3 166 89.2
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-72 276.9 159 91.8
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.4e-72 273.9 168 79.8
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 3.2e-71 271.9 158 91.1
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-71 271.2 163 87.1
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 9.3e-71 270.4 167 86.8
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 3.0e-69 265.4 165 86.1
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 3.0e-69 265.4 165 86.1
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.4e-66 256.5 165 84.2
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 1.0e-64 250.4 158 79.1
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.4e-63 246.5 157 86.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-62 242.3 165 73.9
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.7e-62 242.3 148 79.7
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.9e-61 238.4 168 79.2
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 9.7e-60 233.8 140 90.0
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 3.7e-59 231.9 133 83.5
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 8.2e-59 230.7 140 89.3
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 8.2e-59 230.7 140 89.3
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 8.2e-59 230.7 140 89.3
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.8e-58 229.6 129 94.6
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-56 223.4 159 73.0
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.7e-56 223.0 131 81.7
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 5.5e-55 218.0 160 66.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.3e-53 212.6 154 78.6
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.0e-53 212.2 142 84.5
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.5e-52 209.9 102 96.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.5e-52 209.9 102 96.1
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.7e-51 206.5 123 91.9
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.2e-51 206.1 99 97.0
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 2.8e-51 205.7 119 92.4
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 3.7e-51 205.3 102 94.1
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 8.2e-51 204.1 114 96.5
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-50 203.8 130 86.9
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 1.8e-50 203.0 139 74.1
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.4e-50 202.6 118 94.1
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.4e-50 202.6 118 94.1
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 1.3e-48 196.8 142 73.2
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 2.9e-48 195.7 97 93.8
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.5e-47 191.4 97 91.8
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 7.9e-46 187.6 164 62.8
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-45 186.0 95 90.5
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-44 182.2 94 88.3
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 4.4e-44 181.8 94 88.3
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 4.4e-44 181.8 94 88.3
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 7.4e-44 181.0 92 90.2
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 7.4e-44 181.0 92 90.2
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.3e-43 180.3 92 90.2
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 2.2e-43 179.5 94 87.2
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 2.8e-43 179.1 91 90.1
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-42 175.6 99 82.8
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.1e-42 175.3 91 87.9
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 9.1e-42 174.1 100 94.0
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 5.9e-41 171.4 98 94.9
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.0e-40 170.6 140 64.3
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.3e-40 170.2 124 69.4
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.7e-40 169.9 100 83.0
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.8e-40 168.7 95 83.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.9e-39 166.4 83 91.6
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 2.7e-38 162.5 92 79.3
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 4.7e-38 161.8 92 83.7
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 8.0e-38 161.0 94 83.0
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 8.8e-37 157.5 163 52.1
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 2.0e-36 156.4 92 81.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.0e-36 156.4 92 81.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.0e-36 156.4 92 81.5
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 2.6e-36 156.0 91 82.4
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 5.7e-36 154.8 95 75.8
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 2.4e-34 149.4 81 86.4
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 4.1e-34 148.7 158 53.8
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 7.0e-34 147.9 85 81.2
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 2.7e-33 146.0 90 77.8
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-33 146.0 76 90.8
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.2e-32 142.9 72 94.4
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 2.1e-30 136.3 105 67.6
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 2.1e-30 136.3 69 92.8
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 6.1e-30 134.8 117 65.0
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.0e-30 134.4 65 95.4
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 3.7e-27 125.6 65 87.7
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 3.5e-25 119.0 76 75.0
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.0e-24 117.5 159 45.3
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.6e-22 110.2 76 73.7
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 2.7e-22 109.4 89 59.6
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 2.2e-19 99.8 54 85.2
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.8e-19 99.4 76 65.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 3.7e-19 99.0 81 59.3
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 6.3e-19 98.2 54 83.3
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 8.3e-19 97.8 53 84.9
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.4e-18 96.3 70 64.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.1e-18 95.9 72 68.1
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 5.4e-18 95.1 53 83.0
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 9.2e-18 94.4 74 67.6
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.0e-17 93.2 48 91.7
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 1.1e-15 87.4 64 62.5
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 2.5e-15 86.3 45 86.7
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 5.6e-15 85.1 47 83.0
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 9.5e-15 84.3 43 90.7
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 2.1e-14 83.2 114 43.9
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.0e-14 81.3 40 95.0
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.3e-13 79.7 55 69.1
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 6.8e-13 78.2 38 94.7
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-12 77.4 41 92.7
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 5.7e-12 75.1 51 68.6
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 1.3e-11 73.9 62 59.7
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-10 70.1 52 65.4
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 2.3e-08 63.2 37 81.1
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 2.1e-06 56.6 25 100.0
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 3.6e-06 55.8 129 35.7


User provided reference genes

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