Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502741 Rosa chinensis HOM05D000533 ORTHO05D002807 1.5e-27 125.6 66 100.0
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 2.0e-24 115.2 65 92.3
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 2.6e-24 114.8 65 92.3
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 2.6e-24 114.8 65 92.3
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 2.6e-24 114.8 65 92.3
Lalb_Chr07g0191801 Lupinus albus HOM05D000533 ORTHO05D002807 3.4e-24 114.4 65 92.3
Lalb_Chr09g0335431 Lupinus albus HOM05D000533 ORTHO05D002807 3.4e-24 114.4 65 92.3
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 4.4e-24 114.0 65 92.3
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-24 114.0 65 92.3
EL10Ac1g02291 Beta vulgaris HOM05D000533 ORTHO05D002807 5.7e-24 113.6 65 92.3
EL10As15g24098 Beta vulgaris HOM05D000533 ORTHO05D002807 5.7e-24 113.6 65 92.3
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 7.5e-24 113.2 66 89.4
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 90.8
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 9.8e-24 112.8 65 92.3
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.3e-23 112.5 65 89.2
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 1.3e-23 112.5 65 90.8
arahy.Tifrunner.gnm1.ann1.RBM67I Arachis hypogaea HOM05D000533 ORTHO05D002807 1.7e-23 112.1 65 90.8
arahy.Tifrunner.gnm1.ann1.F0S3GF Arachis hypogaea HOM05D000533 ORTHO05D002807 2.2e-23 111.7 64 90.6
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 8.3e-23 109.8 62 90.3
arahy.Tifrunner.gnm1.ann1.U57TMC Arachis hypogaea HOM05D000533 ORTHO05D002807 1.4e-22 109.0 65 89.2
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 1.4e-22 109.0 65 89.2
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.4e-22 109.0 65 89.2
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 1.4e-22 109.0 65 89.2
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.8e-22 108.6 65 89.2
Gohir.1Z049702 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.4e-22 108.2 65 87.7
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 3.1e-22 107.8 64 87.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.1e-22 107.8 64 87.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.1e-22 107.8 64 87.5
Nitab4.5_0001783g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.1e-22 107.8 64 87.5
MELO3C000179.2 Cucumis melo HOM05D000533 ORTHO05D002807 4.1e-22 107.5 63 88.9
BolSC29t60549H Brassica oleracea HOM05D000533 ORTHO05D002807 5.4e-22 107.1 64 85.9
Migut.D01249 Erythranthe guttata HOM05D000533 ORTHO05D002807 7.0e-22 106.7 65 86.2
Solyc11g021230.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.0e-22 106.7 64 89.1
arahy.Tifrunner.gnm1.ann1.CXW88U Arachis hypogaea HOM05D000533 ORTHO05D002807 4.5e-21 104.0 63 84.1
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 3.8e-20 100.9 63 85.7
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 6.6e-20 100.1 64 81.2
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 8.0e-18 93.2 50 92.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 8.0e-18 93.2 50 92.0
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-17 91.7 50 92.0
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-17 91.7 50 92.0
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-17 91.7 50 92.0
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-17 91.7 50 92.0
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-17 91.7 50 92.0
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-17 91.7 50 92.0
Lsat_1_v5_gn_4_118121 Lactuca sativa HOM05D000533 ORTHO05D002807 2.3e-17 91.7 50 92.0
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 2.3e-17 91.7 50 92.0
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 2.3e-17 91.7 50 92.0
Solyc02g080275.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.3e-17 91.7 50 92.0
Duzib093G2216 Durio zibethinus HOM05D000533 ORTHO05D002807 3.0e-17 91.3 50 90.0
BolC2t10599H Brassica oleracea HOM05D000533 ORTHO05D002807 5.2e-17 90.5 50 90.0
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 5.2e-17 90.5 50 90.0
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 5.2e-17 90.5 50 92.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 6.3e-15 83.6 50 82.0
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 6.3e-15 83.6 50 82.0
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 2.0e-13 78.6 50 76.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 5.9e-13 77.0 56 73.2
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 2.1e-10 68.6 41 85.4
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 6.1e-10 67.0 65 64.6
Nitab4.5_0001313g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.3e-09 65.1 41 85.4
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.8e-09 63.5 34 97.1
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 1.4e-06 55.8 64 51.6
Hund17908 Selenicereus undatus HOM05D000533 ORTHO05D002807 1.4e-06 55.8 37 78.4
Glyma.18G155550 Glycine max HOM05D000533 ORTHO05D002807 4.1e-06 54.3 37 75.7
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.1e-06 54.3 27 96.3
Solyc02g011790.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 5.4e-06 53.9 40 75.0


User provided reference genes

Program Settings