Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.6e-294 1014.6 504 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.2e-219 766.5 508 76.4
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 2.1e-206 722.6 500 73.0
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 6.0e-206 721.1 510 73.7
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.5e-204 716.5 506 72.7
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 6.2e-203 711.1 506 70.8
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 5.8e-201 704.5 504 70.4
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.0e-197 693.7 506 69.4
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.3e-197 693.3 509 69.5
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 4.3e-196 688.3 508 70.3
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 4.3e-196 688.3 504 70.2
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.1e-194 682.2 511 68.7
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 4.0e-194 681.8 511 69.7
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 5.8e-193 677.9 506 69.0
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 5.8e-193 677.9 506 69.0
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 9.9e-193 677.2 510 69.0
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-192 676.8 511 69.7
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.9e-192 674.9 511 68.5
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-191 673.3 511 68.3
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.0e-189 667.2 509 67.8
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 2.8e-187 659.1 504 68.5
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.3e-184 650.2 508 65.4
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 4.9e-184 648.3 508 67.3
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-183 647.1 510 65.7
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 1.4e-183 646.7 509 66.4
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-183 646.0 509 66.0
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 6.0e-182 641.3 509 66.0
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-181 639.0 509 65.4
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.1e-180 637.1 509 65.2
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.5e-180 636.7 509 65.2
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 2.1e-179 632.9 507 66.1
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.8e-178 629.8 452 72.6
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.3e-176 623.6 438 73.1
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.5e-175 619.4 511 63.6
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 5.5e-175 618.2 508 65.6
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 6.0e-174 614.8 510 65.3
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-172 610.5 511 63.2
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 8.2e-171 604.4 419 73.0
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 5.7e-164 581.6 445 67.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 3.7e-163 578.9 510 62.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.2e-163 577.8 422 71.1
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 9.1e-162 574.3 506 60.7
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.0e-160 570.9 519 60.3
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-159 566.6 511 61.6
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-159 566.6 511 61.6
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-159 566.6 511 61.6
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-159 566.6 511 61.6
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-159 566.6 511 61.6
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-158 563.9 513 58.7
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-157 560.1 469 64.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-152 543.5 407 68.6
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.3e-149 533.1 480 59.8
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.3e-136 490.7 513 53.8
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.7e-134 483.0 507 56.0
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.3e-131 474.2 335 71.6
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.7e-128 463.8 392 62.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.5e-127 458.8 450 56.7
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 8.6e-120 434.9 473 53.1
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 1.5e-116 424.1 397 59.2
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.8e-108 394.8 506 46.6
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.2e-106 389.8 505 48.1
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.6e-105 387.5 300 68.0
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.7e-105 386.7 291 70.1
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.3e-104 384.4 356 61.0
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.9e-95 354.0 334 58.4
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 5.8e-92 342.4 309 58.6
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 5.8e-92 342.4 233 72.1
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 4.3e-87 326.2 266 63.9
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 4.3e-87 326.2 266 63.9
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.0e-80 305.1 296 59.5
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 5.1e-80 302.8 213 69.5
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 5.1e-80 302.8 213 69.5
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 5.1e-80 302.8 213 69.5
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 5.1e-80 302.8 213 69.5
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 5.1e-80 302.8 213 69.5
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 4.8e-70 269.6 322 48.8
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.2e-70 269.2 298 53.4
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-65 254.6 183 70.5
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.0e-64 250.4 267 53.9
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.3e-62 245.0 191 67.0
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 8.2e-62 242.3 217 62.2
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 2.0e-60 237.7 170 69.4
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.4e-60 236.9 509 36.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 4.6e-57 226.5 159 71.1
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 8.7e-56 222.2 146 72.6
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.5e-55 220.7 236 51.3
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 2.6e-52 210.7 159 66.7
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-50 204.9 151 67.5
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 9.3e-50 202.2 144 70.1
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.2e-46 191.0 127 74.8
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 2.8e-46 190.7 468 33.1
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-45 187.2 218 50.9
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 2.0e-44 184.5 122 75.4
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 2.6e-44 184.1 136 64.7
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 7.7e-44 182.6 120 74.2
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.3e-43 181.8 143 65.0
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 5.5e-42 176.4 124 71.8
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.7e-41 173.3 134 67.9
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.7e-41 173.3 117 74.4
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 1.1e-39 168.7 134 68.7
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 2.6e-39 167.5 169 54.4
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-39 167.2 131 66.4
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.2e-38 164.5 131 66.4
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.9e-36 156.4 130 64.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 7.7e-36 156.0 117 65.8
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 8.5e-35 152.5 158 55.1
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 9.4e-34 149.1 104 70.2
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-33 148.3 118 66.1
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 4.7e-33 146.7 140 59.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.0e-33 146.0 108 68.5
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 8.0e-33 146.0 105 71.4
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.4e-32 145.2 114 59.6
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 2.0e-31 141.4 96 72.9
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 5.7e-31 139.8 106 67.0
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.3e-30 136.3 86 79.1
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 5.9e-28 129.8 128 53.1
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 7.7e-28 129.4 106 65.1
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.3e-27 128.6 119 58.8
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 1.7e-27 128.3 83 73.5
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 5.5e-26 123.2 85 71.8
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 5.5e-26 123.2 159 45.3
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.6e-25 121.7 80 73.8
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.0e-24 117.1 80 71.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 7.5e-23 112.8 419 27.4
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-22 111.7 94 63.8
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.8e-22 110.9 115 48.7
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-21 108.2 164 43.3
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 2.4e-21 107.8 83 69.9
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 4.5e-20 103.6 65 81.5
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-19 101.7 78 62.8
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.0e-19 100.1 82 63.4
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.5e-18 97.8 66 72.7
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 2.7e-17 94.4 74 62.2
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 1.8e-16 91.7 82 56.1
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-16 91.7 68 72.1
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.0e-15 88.2 56 75.0
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.0e-15 88.2 56 75.0
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-15 88.2 54 81.5
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 4.1e-13 80.5 60 71.7
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 1.6e-12 78.6 52 71.2
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.6e-12 78.6 59 59.3
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.7e-12 76.3 46 76.1
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 1.0e-11 75.9 60 63.3
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.1e-10 72.4 95 44.2
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.9e-10 71.6 46 65.2
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 7.2e-10 69.7 60 55.0
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.0e-08 63.9 53 62.3
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 1.2e-07 62.4 34 85.3
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 3.4e-07 60.8 78 48.7
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 7.5e-07 59.7 39 76.9
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 9.8e-07 59.3 42 73.8
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 1.3e-06 58.9 42 54.8
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 4.9e-06 57.0 69 53.6
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 8.3e-06 56.2 39 64.1
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 8.3e-06 56.2 93 44.1


User provided reference genes

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