Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 8.7e-45 183.3 98 100.0
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 3.0e-37 158.3 88 97.7
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 2.8e-35 151.8 102 85.3
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.5e-31 138.7 98 81.6
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.5e-31 138.7 98 81.6
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.5e-31 138.7 98 81.6
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 6.3e-27 124.0 74 90.5
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 8.2e-27 123.6 74 90.5
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.6e-25 118.6 71 87.3
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 5.0e-24 114.4 63 98.4
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 3.2e-23 111.7 63 95.2
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 3.2e-23 111.7 63 95.2
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-23 110.9 63 95.2
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-23 110.9 63 95.2
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-23 110.9 63 95.2
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-23 110.9 63 95.2
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-23 110.9 63 95.2
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 5.5e-23 110.9 63 95.2
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 95.2
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 95.2
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 2.1e-22 109.0 63 92.1
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 2.1e-22 109.0 63 93.7
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 2.7e-22 108.6 68 85.3
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 92.1
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 4.7e-22 107.8 63 93.7
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.1e-22 107.5 63 92.1
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.1e-22 107.5 63 92.1
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 8.0e-22 107.1 63 92.1
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 8.0e-22 107.1 62 90.3
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 1.0e-21 106.7 63 90.5
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 1.4e-21 106.3 63 90.5
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.0e-21 105.1 63 90.5
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 4.0e-21 104.8 63 92.1
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 6.7e-21 104.0 63 92.1
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 6.7e-21 104.0 59 94.9
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.7e-21 104.0 63 90.5
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 8.8e-21 103.6 63 88.9
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 1.5e-20 102.8 63 88.9
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 3.3e-20 101.7 63 88.9
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 3.3e-20 101.7 63 84.1
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 4.4e-20 101.3 62 88.7
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.2e-19 99.0 63 85.7
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 2.8e-19 98.6 63 84.1
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 8.2e-19 97.1 67 80.6
Lsat_1_v5_gn_8_5961 Lactuca sativa HOM05D007755 ORTHO05D009866 1.4e-18 96.3 78 71.8
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 1.8e-18 95.9 59 86.4
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 1.8e-18 95.9 59 86.4
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 2.4e-18 95.5 56 89.3
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 2.4e-18 95.5 63 81.0
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 1.6e-17 92.8 54 88.9
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 4.5e-17 91.3 63 81.0
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 1.3e-16 89.7 59 84.7
Nn2g13213 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.5e-15 85.5 47 93.6
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 5.2e-13 77.8 47 87.2
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 1.5e-12 76.3 43 93.0
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 7.5e-12 73.9 63 68.3
Nn055s41929 Nelumbo nucifera HOM05D007755 ORTHO05D035211 2.4e-10 68.9 60 73.3
SMO086G0034 Selaginella moellendorffii HOM05D007755 ORTHO05D009866 3.1e-10 68.6 61 65.6
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 4.1e-10 68.2 45 80.0
MD00G1208700 Malus domestica HOM05D007755 ORTHO05D009866 3.5e-09 65.1 49 75.5
CSS0030059 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 5.9e-09 64.3 71 59.2
Eucgr.F03556 Eucalyptus grandis HOM05D007755 ORTHO05D035211 3.8e-08 61.6 40 87.5


User provided reference genes

Program Settings