Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.4e-50 202.6 101 100.0
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 5.5e-50 200.7 101 98.0
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.0e-48 196.4 101 96.0
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.0e-48 196.4 101 96.0
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 1.8e-48 195.7 101 95.0
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 2.3e-48 195.3 101 96.0
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 2.3e-48 195.3 101 96.0
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 2.3e-48 195.3 101 96.0
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 5.1e-48 194.1 101 95.0
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 5.1e-48 194.1 101 95.0
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 5.1e-48 194.1 101 94.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 8.7e-48 193.4 101 95.0
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 95.0
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 1.5e-47 192.6 101 95.0
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.5e-47 192.6 101 95.0
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.5e-47 192.6 101 95.0
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.5e-47 192.6 101 95.0
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.5e-47 192.6 101 95.0
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 2.5e-47 191.8 101 95.0
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 94.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 92.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 92.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 92.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 2.1e-46 188.7 101 92.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 93.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 93.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 93.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 92.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 1.8e-45 185.7 101 92.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.4e-45 185.3 101 91.1
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 4.0e-45 184.5 99 93.9
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 4.0e-45 184.5 99 93.9
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 4.0e-45 184.5 99 93.9
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 2.0e-44 182.2 99 91.9
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.0e-44 182.2 101 91.1
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 3.4e-44 181.4 101 90.1
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 4.9e-43 177.6 101 88.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 1.4e-42 176.0 97 88.7
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 4.2e-42 174.5 98 89.8
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 5.5e-42 174.1 94 91.5
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 5.5e-42 174.1 101 87.1
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 1.6e-41 172.6 88 94.3
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.7e-41 171.8 101 85.1
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.7e-41 171.8 101 85.1
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 3.5e-41 171.4 101 86.1
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 2.3e-40 168.7 101 87.1
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 2.3e-40 168.7 101 86.1
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 1.1e-39 166.4 101 82.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.5e-39 165.2 100 86.0
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 3.3e-39 164.9 86 96.5
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 1.6e-38 162.5 99 82.8
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 6.3e-38 160.6 101 81.2
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 8.2e-38 160.2 86 94.2
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.2e-36 156.4 86 91.9
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 3.4e-36 154.8 101 77.2
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 2.2e-35 152.1 93 83.9
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 2.7e-33 145.2 94 76.6
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 1.3e-32 142.9 70 94.3
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 1.8e-32 142.5 79 92.4
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 1.8e-32 142.5 74 90.5
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 4.8e-30 134.4 76 89.5
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 8.2e-30 133.7 95 74.7
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 1.5e-28 129.4 97 71.1
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 1.7e-27 125.9 99 62.6
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.8e-27 124.8 72 88.9
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 1.9e-26 122.5 56 100.0
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 9.7e-23 110.2 64 90.6
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 6.9e-21 104.0 62 88.7
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 3.4e-20 101.7 56 85.7
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 1.0e-19 100.1 48 93.8
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 2.5e-18 95.5 57 87.7
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 2.7e-17 92.0 48 89.6
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 3.6e-17 91.7 91 61.5
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 7.0e-13 77.4 51 84.3
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 3.5e-12 75.1 51 80.4
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 7.7e-12 73.9 95 49.5
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 2.9e-11 72.0 33 93.9
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 3.8e-11 71.6 97 51.5
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 3.0e-08 62.0 27 100.0
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.5e-07 59.7 92 44.6
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 3.3e-07 58.5 27 92.6
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.3e-06 56.6 92 43.5
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.3e-06 56.6 92 43.5
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 1.7e-06 56.2 91 40.7
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 2.2e-06 55.8 91 40.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 3.7e-06 55.1 95 44.2
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.8e-06 54.7 91 41.8
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.8e-06 54.7 91 41.8
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 4.8e-06 54.7 91 39.6
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 6.3e-06 54.3 94 38.3
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 6.3e-06 54.3 90 38.9
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 43.2
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 38.3
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 38.3
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 38.3


User provided reference genes

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