Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 8.8e-95 350.1 159 100.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.4e-92 342.0 159 96.9
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 5.3e-92 340.9 159 96.9
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 9.1e-92 340.1 159 96.2
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 9.1e-92 340.1 159 96.2
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 9.1e-92 340.1 159 96.9
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 9.1e-92 340.1 158 97.5
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 1.2e-91 339.7 159 96.2
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.2e-91 339.7 159 96.2
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 4.5e-91 337.8 159 96.2
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 4.5e-91 337.8 159 96.2
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 4.5e-91 337.8 159 95.6
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 7.7e-91 337.0 159 94.3
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.0e-90 336.7 159 96.2
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 95.0
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 95.0
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 3.8e-90 334.7 159 95.6
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 3.8e-90 334.7 160 96.2
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.0e-90 334.3 159 95.0
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 5.0e-90 334.3 159 94.3
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-89 333.2 159 95.0
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 94.3
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.1
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-88 329.7 159 93.7
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 1.2e-88 329.7 157 94.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 1.2e-88 329.7 157 94.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 1.2e-88 329.7 157 94.9
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.6e-88 329.3 159 93.7
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.1e-88 328.9 159 93.7
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 3.6e-88 328.2 159 93.7
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 7.9e-88 327.0 159 93.1
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 2.3e-87 325.5 159 90.6
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.1e-86 323.2 159 89.9
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 1.5e-86 322.8 157 94.3
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 93.1
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 5.7e-86 320.9 158 91.1
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 9.7e-86 320.1 159 91.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 1.7e-85 319.3 159 90.6
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 4.8e-85 317.8 159 89.9
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.1e-84 316.6 159 89.9
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-84 316.6 159 90.6
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-84 315.1 159 89.9
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 7.0e-84 313.9 159 91.2
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 2.0e-83 312.4 151 92.7
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 4.5e-83 311.2 158 89.2
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 2.2e-82 308.9 154 90.9
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 2.9e-82 308.5 159 88.1
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 5.5e-81 304.3 144 95.1
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 5.5e-81 304.3 144 95.1
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 5.5e-81 304.3 144 95.1
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 9.4e-81 303.5 142 97.2
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.0e-79 300.1 143 95.1
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 3.0e-79 298.5 144 93.8
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 4.4e-78 294.7 159 84.9
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.7e-77 292.7 139 95.0
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.1e-76 290.0 159 83.0
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.5e-75 284.6 159 84.3
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.0e-74 283.5 159 83.0
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.5e-74 280.8 139 91.4
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.2e-72 276.6 149 85.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 3.0e-71 271.9 144 87.5
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 9.8e-70 266.9 134 91.0
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.8e-68 262.7 134 88.8
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 7.0e-68 260.8 159 77.4
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 9.1e-68 260.4 159 77.4
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.9e-67 257.7 151 81.5
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 6.5e-66 254.2 159 76.7
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-65 253.4 163 74.2
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 9.4e-65 250.4 117 97.4
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 9.8e-62 240.4 132 83.3
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.1e-60 233.8 139 76.3
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.7e-59 232.3 135 80.7
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 2.3e-58 229.2 136 80.9
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 4.2e-57 224.9 158 70.3
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 6.1e-56 221.1 134 79.1
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 6.1e-56 221.1 112 89.3
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 6.8e-55 217.6 109 90.8
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.6e-54 215.7 159 65.4
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.6e-54 215.7 159 65.4
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.6e-54 215.7 159 65.4
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 5.7e-54 214.5 100 95.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 5.7e-54 214.5 100 95.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 5.7e-54 214.5 100 95.0
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 9.8e-54 213.8 104 94.2
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 4.9e-53 211.5 107 87.9
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 4.9e-53 211.5 107 87.9
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.3e-53 211.1 101 92.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 3.2e-52 208.8 102 90.2
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 7.0e-52 207.6 162 66.7
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 4.6e-51 204.9 112 84.8
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 5.9e-51 204.5 100 91.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 5.9e-51 204.5 95 98.9
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 5.0e-50 201.4 101 90.1
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.2e-48 196.8 109 85.3
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 4.7e-48 194.9 110 82.7
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 1.2e-46 190.3 115 76.5
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.2e-46 190.3 111 78.4
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.5e-46 189.9 150 70.7
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-46 189.5 109 80.7
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.3e-45 186.8 108 79.6
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 2.9e-45 185.7 92 92.4
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.3e-42 176.8 90 87.8
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 1.3e-42 176.8 93 87.1
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.7e-42 176.4 100 83.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.7e-42 176.4 83 96.4
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 3.9e-42 175.3 84 92.9
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 5.0e-42 174.9 83 97.6
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 5.0e-42 174.9 83 95.2
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 3.3e-41 172.2 83 95.2
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.6e-40 169.9 86 87.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.6e-40 168.7 83 92.8
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 1.8e-39 166.4 82 92.7
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.1e-36 157.1 92 77.2
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 7.8e-35 151.0 78 85.9
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 1.3e-34 150.2 72 95.8
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.3e-34 150.2 84 83.3
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.9e-34 148.7 83 83.1
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.1e-33 147.1 83 81.9
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.3e-33 145.2 78 84.6
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 7.3e-33 144.4 68 97.1
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 2.6e-30 136.0 65 93.8
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 3.4e-30 135.6 124 58.9
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.2e-28 129.0 59 96.6
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.6e-27 126.7 57 100.0
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 8.6e-26 120.9 59 91.5
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.3e-25 118.6 58 87.9
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 3.6e-24 115.5 55 92.7
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-22 109.4 54 90.7
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.4e-22 108.6 69 71.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 1.3e-21 107.1 53 90.6
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 2.9e-21 105.9 99 53.5
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.4e-21 104.4 50 94.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 1.2e-19 100.5 53 83.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 1.9e-17 93.2 43 93.0
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.9e-17 93.2 86 51.2
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 3.6e-16 89.0 41 95.1
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 2.4e-15 86.3 48 85.4
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.2e-13 79.7 39 87.2
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.1e-11 73.2 53 66.0
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 5.1e-10 68.6 32 90.6
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.5e-09 67.0 68 48.5
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.8e-08 62.8 95 34.7
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 1.1e-07 60.8 38 63.2
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.4e-07 60.5 88 33.0
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 1.8e-07 60.1 59 55.9
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-06 55.5 24 95.8
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 4.5e-06 55.5 27 92.6


User provided reference genes

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