Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 9.7e-47 189.9 102 100.0
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 8.2e-46 186.8 102 99.0
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.7e-44 180.3 102 95.1
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 7.7e-44 180.3 102 95.1
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-43 179.5 102 95.1
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 2.2e-43 178.7 102 95.1
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 2.2e-43 178.7 102 95.1
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 2.2e-43 178.7 102 95.1
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 6.5e-43 177.2 102 94.1
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 1.9e-42 175.6 102 93.1
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 3.2e-42 174.9 102 92.2
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 3.2e-42 174.9 102 92.2
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 3.2e-42 174.9 102 93.1
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.2e-42 174.9 102 93.1
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 92.2
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 92.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 92.2
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.6e-41 172.6 102 91.2
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 2.1e-41 172.2 102 90.2
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 2.1e-41 172.2 102 92.2
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 2.7e-41 171.8 102 92.2
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.7e-41 171.8 102 91.2
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 91.2
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 91.2
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 91.2
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 3.6e-41 171.4 102 90.2
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 4.7e-41 171.0 100 92.0
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 4.7e-41 171.0 102 89.2
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 1.0e-40 169.9 102 89.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.0e-40 169.9 99 92.9
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 2.3e-40 168.7 102 88.2
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 7.5e-39 163.7 102 87.3
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 7.5e-39 163.7 94 91.5
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 3.7e-38 161.4 101 83.2
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 8.2e-38 160.2 102 87.3
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.1e-37 157.9 102 85.3
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 4.1e-37 157.9 105 84.8
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 4.1e-37 157.9 105 84.8
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 5.3e-37 157.5 99 85.9
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 1.6e-36 156.0 101 85.1
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 3.5e-36 154.8 91 91.2
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 3.8e-35 151.4 102 80.4
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.2e-34 147.1 82 95.1
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 2.6e-31 138.7 86 88.4
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 4.4e-31 137.9 88 86.4
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 4.4e-31 137.9 88 86.4
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.0e-29 130.6 89 80.9
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 7.7e-28 127.1 119 66.4
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-27 126.3 89 78.7
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-26 123.2 84 81.0
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.6e-25 119.4 70 94.3
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-25 119.0 69 91.3
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 4.7e-25 117.9 70 92.9
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 4.7e-25 117.9 70 92.9
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 4.7e-25 117.9 70 92.9
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 83 78.3
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.0e-24 116.7 68 91.2
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 6.8e-24 114.0 70 90.0
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 6.8e-24 114.0 70 90.0
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 3.4e-23 111.7 62 91.9
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.4e-23 111.3 70 88.6
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 5.7e-23 110.9 77 75.3
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 7.5e-23 110.5 106 62.3
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 7.5e-23 110.5 106 62.3
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 3.7e-22 108.2 85 74.1
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 6.3e-22 107.5 70 88.6
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 2.4e-21 105.5 59 91.5
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 4.1e-21 104.8 87 72.4
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 4.1e-21 104.8 87 72.4
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 5.4e-21 104.4 60 90.0
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 1.1e-18 96.7 55 92.7
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 2.5e-18 95.5 55 87.3
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 3.3e-18 95.1 56 87.5
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.3e-18 95.1 59 84.7
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 1.6e-17 92.8 53 94.3
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 6.1e-17 90.9 59 83.1
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 8.0e-17 90.5 81 70.4
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 4.0e-16 88.2 56 83.9
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 8.9e-16 87.0 48 97.9
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 1.1e-13 80.1 51 80.4
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 2.7e-12 75.5 41 92.7
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 3.5e-12 75.1 45 84.4
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 4.3e-10 68.2 40 90.0
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 2.1e-09 65.9 37 89.2
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 1.4e-08 63.2 46 71.7
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 8.9e-08 60.5 74 50.0


User provided reference genes

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