Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0501871 Rosa chinensis HOM05D002824 ORTHO05D007162 5.4e-69 264.2 135 100.0
PGR111G0083 Punica granatum HOM05D002824 ORTHO05D007162 1.2e-60 236.5 135 89.6
CAN.G1595.2 Capsicum annuum HOM05D002824 ORTHO05D007162 5.9e-60 234.2 135 87.4
Solyc00g500031.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 5.9e-60 234.2 135 87.4
Solyc00g500076.1 Solanum lycopersicum HOM05D002824 ORTHO05D007162 5.9e-60 234.2 135 87.4
Gohir.1Z050134 Gossypium hirsutum HOM05D002824 ORTHO05D007162 7.8e-60 233.8 135 87.4
TAR375G0295 Trochodendron aralioides HOM05D002824 ORTHO05D007162 1.7e-59 232.6 135 88.9
CAN.G327.20 Capsicum annuum HOM05D002824 ORTHO05D007162 3.0e-59 231.9 135 87.4
Gohir.A12G024800 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.9e-59 231.5 135 86.7
Nn021s41522 Nelumbo nucifera HOM05D002824 ORTHO05D007162 5.0e-59 231.1 135 88.1
Gohir.A06G056900 Gossypium hirsutum HOM05D002824 ORTHO05D007162 4.3e-58 228.0 135 85.2
PSO548G0051 Papaver somniferum HOM05D002824 ORTHO05D007162 7.3e-58 227.3 135 88.1
AL2G20560 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 9.5e-58 226.9 135 85.2
AL2G21720 Arabidopsis lyrata HOM05D002824 ORTHO05D007162 9.5e-58 226.9 135 85.2
ATCG00770 Arabidopsis thaliana HOM05D002824 ORTHO05D007162 2.1e-57 225.7 135 84.4
BNapus_Darmor_BZH_scaffold_253p00350 Brassica napus HOM05D002824 ORTHO05D007162 2.1e-57 225.7 135 84.4
Migut.D01328 Erythranthe guttata HOM05D002824 ORTHO05D007162 2.1e-57 225.7 135 85.2
CARHR282250 Cardamine hirsuta HOM05D002824 ORTHO05D007162 2.8e-57 225.3 135 83.7
Cpa.g.sc0.196 Carica papaya HOM05D002824 ORTHO05D007162 2.8e-57 225.3 130 90.0
DCAR_032521 Daucus carota HOM05D002824 ORTHO05D007162 3.6e-57 224.9 135 85.2
BolSC29t60529H Brassica oleracea HOM05D002824 ORTHO05D007162 6.2e-57 224.2 135 83.7
BolSC29t60610H Brassica oleracea HOM05D002824 ORTHO05D007162 6.2e-57 224.2 135 83.7
BolSC35t60729H Brassica oleracea HOM05D002824 ORTHO05D007162 6.2e-57 224.2 135 83.7
BraSC103t45445Z Brassica rapa HOM05D002824 ORTHO05D007162 6.2e-57 224.2 135 83.7
BraSC138t45553Z Brassica rapa HOM05D002824 ORTHO05D007162 6.2e-57 224.2 135 83.7
ClCG00G003160 Citrullus lanatus HOM05D002824 ORTHO05D007162 1.8e-56 222.6 131 86.3
BraSC58t46441Z Brassica rapa HOM05D002824 ORTHO05D007162 2.3e-56 222.2 135 83.7
BNapus_Darmor_BZH_scaffold_287p00270 Brassica napus HOM05D002824 ORTHO05D007162 3.1e-56 221.9 135 83.0
HanXRQChr00c0394g0574541 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
HanXRQChr01g0020211 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
HanXRQChr10g0284391 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
HanXRQChr10g0318051 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
HanXRQChr11g0326971 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
HanXRQChr12g0369861 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
HanXRQCPg0580191 Helianthus annuus HOM05D002824 ORTHO05D007162 4.0e-56 221.5 135 83.7
Lalb_Chr25g0283371 Lupinus albus HOM05D002824 ORTHO05D007162 1.5e-55 219.5 135 83.0
C02p60170 Brassica napus HOM05D002824 ORTHO05D007162 2.0e-55 219.2 135 82.2
Lalb_Chr03g0039321 Lupinus albus HOM05D002824 ORTHO05D007162 1.3e-54 216.5 135 82.2
HanXRQChr17g0554561 Helianthus annuus HOM05D002824 ORTHO05D007162 9.2e-53 210.3 135 79.3
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.0e-52 209.1 125 86.4
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 2.7e-52 208.8 130 83.1
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 2.7e-52 208.8 130 83.1
Gohir.D11G307000 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.1e-50 203.4 118 84.7
BraA06t25384Z Brassica rapa HOM05D002824 ORTHO05D007162 2.5e-50 202.2 134 78.4
Gohir.A05G396400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 5.6e-50 201.1 114 86.0
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-49 199.9 129 83.7
Gohir.D01G102138 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.6e-49 199.5 118 86.4
LjContig00318g0002732 Lotus japonicus HOM05D002824 ORTHO05D007162 1.6e-49 199.5 135 79.3
Lalb_Chr23g0274241 Lupinus albus HOM05D002824 ORTHO05D007162 4.7e-49 198.0 135 75.6
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 1.4e-48 196.4 118 84.7
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-48 195.3 127 83.5
BolC9t57548H Brassica oleracea HOM05D002824 ORTHO05D007162 7.5e-47 190.7 117 83.8
Gorai.003G111500 Gossypium raimondii HOM05D002824 ORTHO05D007162 1.9e-45 186.0 118 82.2
HanXRQChr11g0345281 Helianthus annuus HOM05D002824 ORTHO05D007162 3.2e-45 185.3 118 79.7
Medtr4g059910 Medicago truncatula HOM05D002824 ORTHO05D007162 7.1e-45 184.1 141 68.8
Gohir.D03G105400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 3.5e-44 181.8 118 79.7
HanXRQChr00c0925g0577901 Helianthus annuus HOM05D002824 ORTHO05D007162 3.0e-43 178.7 113 82.3
Lsat_1_v5_gn_1_116300 Lactuca sativa HOM05D002824 ORTHO05D007162 8.6e-43 177.2 131 73.3
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.5e-42 175.6 115 83.5
Gohir.A12G228400 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.5e-39 166.4 91 89.0
Eucgr.E03558 Eucalyptus grandis HOM05D002824 ORTHO05D007162 1.3e-38 163.3 112 76.8
SEGI_33981 Sequoiadendron giganteum HOM05D002824 ORTHO05D007162 1.9e-37 159.5 135 61.5
GSVIVG01014320001 Vitis vinifera HOM05D002824 ORTHO05D007162 1.3e-35 153.3 93 84.9
Gorai.005G065900 Gossypium raimondii HOM05D002824 ORTHO05D007162 2.3e-35 152.5 97 80.4
BolC7t41708H Brassica oleracea HOM05D002824 ORTHO05D007162 2.5e-34 149.1 94 81.9
Thhalv10027382m.g Eutrema salsugineum HOM05D002824 ORTHO05D007162 3.4e-31 138.7 87 81.6
Gohir.D08G194656 Gossypium hirsutum HOM05D002824 ORTHO05D007162 7.6e-31 137.5 135 59.3
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 9.9e-31 137.1 82 84.1
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.2e-30 136.0 85 82.4
C09p46990 Brassica napus HOM05D002824 ORTHO05D007162 1.1e-29 133.7 82 82.9
Gohir.D08G062280 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.1e-29 133.7 135 58.5
Phvul.001G158000 Phaseolus vulgaris HOM05D002824 ORTHO05D007162 2.4e-29 132.5 99 68.7
arahy.Tifrunner.gnm1.ann1.BAD1H7 Arachis hypogaea HOM05D002824 ORTHO05D007162 1.6e-28 129.8 90 77.8
EL10As15g24111 Beta vulgaris HOM05D002824 ORTHO05D007162 3.1e-24 115.5 93 63.4
Gorai.013G136400 Gossypium raimondii HOM05D002824 ORTHO05D007162 3.1e-24 115.5 71 83.1
MBI05_g05353_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D007162 4.0e-24 115.2 77 76.6
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 4.5e-23 111.7 69 81.2
SMO086G0055 Selaginella moellendorffii HOM05D002824 ORTHO05D007162 2.2e-22 109.4 136 44.9
Gohir.D13G121750 Gossypium hirsutum HOM05D002824 ORTHO05D007162 8.4e-22 107.5 71 80.3
Lalb_Chr20g0114531 Lupinus albus HOM05D002824 ORTHO05D007162 1.4e-21 106.7 70 78.6
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 2.3e-19 99.4 63 82.5
FAN18G2960 Fragaria x ananassa HOM05D015635 ORTHO05D007162 5.1e-19 98.2 56 89.3
MELO3C027652.2 Cucumis melo HOM05D002824 ORTHO05D007162 1.1e-18 97.1 60 85.0
Gohir.A08G063166 Gossypium hirsutum HOM05D002824 ORTHO05D007162 1.9e-18 96.3 58 82.8
BolSC56t61248H Brassica oleracea HOM05D002824 ORTHO05D007162 7.4e-18 94.4 58 82.8
BraSC59t46570Z Brassica rapa HOM05D002824 ORTHO05D007162 7.4e-18 94.4 58 82.8
Medtr3g035490 Medicago truncatula HOM05D001133 ORTHO05D000941 2.8e-17 92.4 52 86.5
Nitab4.5_0000173g0100 Nicotiana tabacum HOM05D000964 ORTHO05D001488 1.1e-16 90.5 55 81.8
BolSC35t60670H Brassica oleracea HOM05D002824 ORTHO05D007162 1.5e-15 86.7 58 77.6
BolSC49t61163H Brassica oleracea HOM05D002824 ORTHO05D007162 1.5e-15 86.7 53 84.9
MELO3C026355.2 Cucumis melo HOM05D002824 ORTHO05D007162 1.5e-15 86.7 58 77.6
HanXRQChr00c0593g0576371 Helianthus annuus HOM05D002824 ORTHO05D007162 2.6e-15 85.9 58 75.9
HanXRQChr04g0127481 Helianthus annuus HOM05D002824 ORTHO05D007162 2.6e-15 85.9 58 75.9
HanXRQChr11g0321101 Helianthus annuus HOM05D002824 ORTHO05D007162 2.6e-15 85.9 58 75.9
BraSC103t45484Z Brassica rapa HOM05D002824 ORTHO05D007162 8.4e-14 80.9 59 74.6
BraSC58t46502Z Brassica rapa HOM05D002824 ORTHO05D007162 8.4e-14 80.9 58 74.1
MELO3C033570.2 Cucumis melo HOM05D002824 ORTHO05D007162 5.5e-13 78.2 60 73.3
SGA_v2.0_scaffold208G41997 Striga asiatica HOM05D002824 ORTHO05D007162 3.5e-12 75.5 50 78.0
Hund08020 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.6e-12 75.1 76 55.3
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 2.3e-11 72.8 51 74.5
SEGI_01834 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 5.1e-11 71.6 56 60.7
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.1e-11 71.6 56 60.7
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.1e-11 71.6 56 60.7
SEGI_09600 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 5.1e-11 71.6 56 60.7
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.1e-11 71.6 56 60.7
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.1e-11 71.6 56 60.7
SEGI_27642 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 5.1e-11 71.6 56 60.7
SEGI_30352 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 1.5e-10 70.1 56 58.9
arahy.Tifrunner.gnm1.ann1.CYZ3KW Arachis hypogaea HOM05D001828 ORTHO05D001745 1.1e-08 63.9 42 78.6
BraSC143t45637Z Brassica rapa HOM05D002824 ORTHO05D007162 6.9e-08 61.2 39 82.1
ClCG10G008280 Citrullus lanatus HOM05D002824 ORTHO05D007162 1.7e-06 56.6 36 80.6


User provided reference genes

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