Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 1.8e-22 108.2 50 100.0
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 6.9e-22 106.3 50 98.0
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 2.0e-21 104.8 50 96.0
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 3.4e-21 104.0 50 94.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 4.5e-21 103.6 50 94.0
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 5.9e-21 103.2 50 92.0
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.9e-21 103.2 49 93.9
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.9e-21 103.2 49 93.9
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.9e-21 103.2 49 93.9
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.9e-21 103.2 49 93.9
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 5.9e-21 103.2 50 92.0
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 5.9e-21 103.2 50 92.0
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 5.9e-21 103.2 50 92.0
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 7.7e-21 102.8 50 94.0
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 7.7e-21 102.8 50 92.0
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 7.7e-21 102.8 50 92.0
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 1.0e-20 102.4 50 94.0
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 1.0e-20 102.4 50 92.0
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.0e-20 102.4 50 92.0
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 2.2e-20 101.3 50 92.0
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 3.8e-20 100.5 50 92.0
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 3.8e-20 100.5 50 92.0
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 5.0e-20 100.1 50 88.0
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 6.5e-20 99.8 50 90.0
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 6.5e-20 99.8 50 90.0
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 8.5e-20 99.4 50 92.0
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 8.5e-20 99.4 50 90.0
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 8.5e-20 99.4 50 90.0
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.4e-19 98.6 50 88.0
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.4e-19 98.6 50 88.0
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 3.2e-19 97.4 50 88.0
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 3.2e-19 97.4 50 90.0
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 5.5e-19 96.7 50 88.0
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 5.5e-19 96.7 50 88.0
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 7.2e-19 96.3 50 86.0
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 1.2e-18 95.5 50 90.0
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 2.1e-18 94.7 49 87.8
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.0e-17 92.4 50 82.0
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 2.3e-17 91.3 50 82.0
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 2.3e-17 91.3 50 80.0
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 3.0e-17 90.9 48 81.2
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 3.9e-17 90.5 47 83.0
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 8.8e-17 89.4 48 79.2
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.0e-16 88.2 50 80.0
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 2.2e-15 84.7 49 75.5
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.8e-15 84.3 50 76.0
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 2.4e-14 81.3 47 74.5
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.1e-14 80.9 37 91.9
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 2.6e-13 77.8 41 75.6
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 2.6e-13 77.8 41 75.6
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 3.4e-13 77.4 49 65.3
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.2e-12 74.7 37 83.8
Medtr8g038480 Medicago truncatula HOM05D000540 ORTHO05D009557 2.2e-12 74.7 39 87.2
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 1.4e-11 72.0 52 65.4
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 1.4e-11 72.0 52 65.4
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.5e-11 71.2 41 73.2
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.5e-11 71.2 41 73.2
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 7.2e-11 69.7 36 83.3
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.0e-09 64.3 31 87.1
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.0e-09 64.3 31 87.1
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.0e-09 64.3 31 87.1
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 1.5e-08 62.0 40 62.5
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 2.0e-08 61.6 40 60.0
BraSC138t45550Z Brassica rapa HOM05D000540 ORTHO05D009557 4.4e-08 60.5 30 83.3
Peaxi162Scf00211g00236 Petunia axillaris HOM05D000540 ORTHO05D000681 2.8e-07 57.8 28 92.9
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 4.8e-07 57.0 34 70.6
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 4.8e-07 57.0 34 70.6
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 6.3e-07 56.6 34 70.6
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 6.3e-07 56.6 45 53.3
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 8.2e-07 56.2 34 67.6
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 2.4e-06 54.7 51 47.1
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 2.4e-06 54.7 49 42.9
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 3.1e-06 54.3 34 67.6
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 4.1e-06 53.9 48 50.0
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 7.0e-06 53.1 48 45.8
SalBow3G1131 Salvia bowleyana HOM05D042125 ORTHO05D037497 7.0e-06 53.1 45 48.9
SalBow3G3871 Salvia bowleyana HOM05D042125 ORTHO05D037497 7.0e-06 53.1 45 48.9


User provided reference genes

Program Settings