Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0501681 Rosa chinensis HOM05D001750 ORTHO05D001825 7.1e-30 133.3 67 100.0
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.2e-24 115.9 63 90.5
Prupe.2G145900 Prunus persica HOM05D001750 ORTHO05D001825 1.3e-20 102.4 62 79.0
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-18 95.5 63 76.2
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-18 95.5 63 76.2
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-18 95.5 63 76.2
BolSC35t60699H Brassica oleracea HOM05D001750 ORTHO05D001825 3.6e-18 94.4 63 74.6
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 3.6e-18 94.4 63 74.6
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 3.6e-18 94.4 63 74.6
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 3.6e-18 94.4 63 74.6
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 4.8e-18 94.0 65 73.8
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.1e-17 92.8 63 73.0
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-17 92.8 63 77.8
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-17 92.8 63 77.8
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 6.9e-17 90.1 63 74.6
Lalb_Chr16g0388591 Lupinus albus HOM05D001750 ORTHO05D001825 6.9e-17 90.1 63 74.6
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 9.0e-17 89.7 63 71.4
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 5.8e-16 87.0 63 68.3
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 5.8e-16 87.0 63 68.3
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.6e-16 86.7 63 71.4
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 9.9e-16 86.3 63 73.0
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 9.9e-16 86.3 63 73.0
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-15 85.5 63 73.0
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-15 85.5 63 73.0
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-15 85.5 63 73.0
Gohir.A12G084295 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-15 85.5 63 73.0
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-15 85.5 63 73.0
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 2.9e-15 84.7 62 69.4
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 3.8e-15 84.3 63 68.3
BolC2t10591H Brassica oleracea HOM05D001750 ORTHO05D001825 4.9e-15 84.0 66 69.7
HanXRQChr17g0557811 Helianthus annuus HOM05D001750 ORTHO05D001825 4.9e-15 84.0 63 66.7
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 4.9e-15 84.0 63 69.8
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 1.1e-14 82.8 61 75.4
EL10Ac5g11664 Beta vulgaris HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr01g0020111 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr05g0152391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr11g0323701 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQChr13g0413591 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-14 82.0 63 65.1
Lj9P89T20 Lonicera japonica HOM05D001750 ORTHO05D001825 2.4e-14 81.6 65 66.2
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 4.2e-14 80.9 63 68.3
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 4.2e-14 80.9 63 68.3
TPR.G34249 Trifolium pratense HOM05D001750 ORTHO05D048894 5.5e-14 80.5 59 69.5
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 7.1e-14 80.1 62 67.7
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 7.1e-14 80.1 62 67.7
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 7.1e-14 80.1 62 67.7
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 7.1e-14 80.1 62 67.7
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.1e-14 80.1 62 69.4
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 1.2e-13 79.3 62 67.7
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.6e-13 79.0 62 69.4
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 4.6e-13 77.4 71 59.2
Glyma.06G151800 Glycine max HOM05D001750 ORTHO05D001825 1.7e-07 58.9 56 53.6


User provided reference genes

Program Settings