Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 3.0e-134 481.9 249 100.0
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 3.3e-133 478.4 249 99.2
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 1.6e-103 379.8 249 79.5
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 1.5e-96 356.7 223 78.0
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 2.8e-95 352.4 250 72.0
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 1.1e-91 340.5 256 70.3
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 3.2e-91 339.0 257 72.8
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 2.5e-88 329.3 256 66.0
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 1.2e-85 320.5 251 67.3
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 4.9e-84 315.1 251 63.7
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 4.9e-84 315.1 255 67.8
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.9e-83 313.2 218 76.1
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.2e-82 310.5 251 66.9
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 4.6e-82 308.5 255 67.8
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 6.0e-82 308.1 249 67.5
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 1.3e-81 307.0 251 68.1
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 1.7e-81 306.6 249 65.5
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 1.9e-80 303.1 257 66.9
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 2.5e-80 302.8 253 66.0
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 9.5e-80 300.8 215 74.0
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 1.6e-79 300.1 255 66.3
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 1.6e-79 300.1 257 65.4
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 3.6e-79 298.9 254 65.4
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 4.7e-79 298.5 249 61.0
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 1.4e-78 297.0 249 61.0
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 2.4e-78 296.2 253 64.4
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 2.4e-78 296.2 249 65.9
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 8.9e-78 294.3 254 64.6
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 1.2e-77 293.9 250 63.2
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 1.5e-77 293.5 249 61.0
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 1.5e-77 293.5 254 63.4
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 1.7e-76 290.0 265 59.2
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 2.2e-76 289.7 256 58.2
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 2.9e-76 289.3 257 61.9
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 4.9e-76 288.5 257 61.9
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 5.4e-75 285.0 256 62.9
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 7.1e-75 284.6 283 56.9
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 9.2e-75 284.3 252 61.1
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 2.1e-74 283.1 283 58.0
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 1.3e-73 280.4 258 64.0
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 6.6e-73 278.1 240 64.2
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 1.9e-72 276.6 226 63.7
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 2.5e-72 276.2 231 63.6
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 3.3e-72 275.8 251 63.7
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 3.6e-71 272.3 258 60.1
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 1.8e-70 270.0 226 62.4
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 4.0e-70 268.9 264 58.7
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 4.0e-70 268.9 253 57.7
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 3.4e-69 265.8 210 68.6
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 6.4e-68 261.5 211 68.7
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 1.4e-67 260.4 258 59.3
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 1.9e-67 260.0 264 56.8
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 3.2e-67 259.2 227 62.1
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 9.3e-67 257.7 261 56.7
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 2.7e-66 256.1 261 57.5
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 2.3e-65 253.1 169 71.6
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 1.5e-64 250.4 205 64.4
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 5.6e-64 248.4 235 59.6
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 9.6e-64 247.7 225 58.2
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 1.6e-63 246.9 233 57.1
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 4.8e-63 245.4 248 57.7
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 1.4e-62 243.8 212 59.9
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 5.3e-62 241.9 231 57.6
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 6.9e-62 241.5 203 66.5
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 1.5e-61 240.4 231 57.1
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 1.5e-61 240.4 278 52.5
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 2.0e-61 240.0 235 54.5
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 2.6e-61 239.6 147 77.6
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 7.6e-61 238.0 251 54.6
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 7.6e-61 238.0 231 56.7
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 7.6e-61 238.0 251 54.6
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 1.3e-60 237.3 178 69.7
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 2.2e-60 236.5 230 56.1
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 1.1e-59 234.2 250 52.0
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 1.4e-59 233.8 258 55.8
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 7.1e-59 231.5 218 59.2
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 1.2e-58 230.7 213 56.8
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 1.6e-58 230.3 264 50.4
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 1.6e-58 230.3 352 44.9
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 4.6e-58 228.8 182 68.7
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 3.9e-57 225.7 192 62.0
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 3.9e-57 225.7 259 53.7
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 1.5e-56 223.8 233 54.9
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 4.3e-56 222.2 219 56.2
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 6.9e-54 214.9 258 49.2
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 3.4e-53 212.6 174 67.8
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 9.9e-53 211.1 173 60.7
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 2.9e-52 209.5 317 41.0
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 1.4e-51 207.2 209 57.4
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 1.2e-50 204.1 174 62.6
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 2.7e-50 203.0 123 77.2
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 7.4e-48 194.9 141 64.5
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 1.1e-43 181.0 232 47.4
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 2.3e-41 173.3 108 75.9
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 3.0e-41 172.9 168 54.8
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 5.1e-41 172.2 256 45.3
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 6.7e-41 171.8 154 57.1
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 1.1e-40 171.0 125 64.8
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 1.9e-40 170.2 207 50.2
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 1.3e-39 167.5 209 48.8
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 1.3e-39 167.5 209 48.8
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 6.3e-39 165.2 152 53.9
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 3.8e-36 156.0 191 44.0
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 1.9e-35 153.7 89 77.5
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 4.1e-30 136.0 82 75.6
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 2.0e-29 133.7 133 48.1
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 1.7e-28 130.6 149 47.7
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 2.5e-27 126.7 86 70.9
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 4.7e-26 122.5 241 35.7
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 4.4e-24 115.9 91 64.8
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 5.9e-13 79.0 233 36.9
FAN25G1192 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.5e-11 74.3 53 73.6
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.2e-08 64.7 92 46.7
MBI18_g11113_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D009042 1.3e-07 61.2 55 61.8
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.0e-06 55.5 60 68.3


User provided reference genes

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