Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 8.0e-275 949.9 506 100.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.5e-268 929.1 495 100.0
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 4.3e-236 821.2 506 86.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.3e-234 815.5 506 86.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 9.2e-231 803.5 507 85.0
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.5e-228 796.2 496 85.3
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.2e-227 793.1 496 84.9
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.2e-225 786.6 506 82.2
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.4e-223 778.9 496 84.1
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 3.2e-223 778.5 496 82.3
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 5.4e-223 777.7 496 84.1
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-222 776.5 526 79.7
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-220 770.0 536 77.8
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.3e-220 768.5 494 81.4
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.3e-220 768.5 506 80.0
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-217 758.8 515 79.4
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.7e-216 756.1 495 82.6
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.9e-216 755.4 490 82.7
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 3.8e-216 755.0 490 82.7
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.2e-214 750.0 487 81.5
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.2e-214 750.0 487 81.9
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.3e-213 745.7 490 81.8
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 8.7e-213 743.8 466 85.4
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.1e-212 743.4 488 82.2
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.1e-212 743.4 506 79.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.9e-212 742.7 490 81.6
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.6e-212 741.1 506 79.2
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.3e-212 740.7 490 79.2
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 9.6e-212 740.3 497 80.5
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.6e-211 738.4 506 79.1
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.8e-210 736.1 506 79.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.4e-210 735.7 479 82.5
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.4e-210 735.7 505 78.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 5.3e-210 734.6 506 78.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.3e-210 734.6 502 78.9
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.5e-209 733.0 506 78.5
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.0e-209 732.6 506 78.7
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.4e-209 731.9 492 80.7
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.3e-208 729.9 475 82.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.7e-208 729.6 498 79.3
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 3.8e-208 728.4 492 79.9
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.8e-208 728.4 505 78.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 4.9e-208 728.0 506 77.9
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.4e-208 727.2 488 79.1
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.9e-207 726.1 497 78.7
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.4e-207 725.7 506 78.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 5.4e-207 724.5 491 80.0
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.2e-206 723.4 507 77.9
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.5e-206 721.8 506 77.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 7.9e-206 720.7 527 75.7
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 3.9e-205 718.4 506 77.9
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-204 716.5 505 76.4
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.3e-204 714.9 494 76.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.1e-203 712.6 501 75.6
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 9.0e-202 707.2 507 76.9
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 4.9e-200 701.4 479 78.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.9e-199 699.5 494 76.5
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.2e-199 698.4 507 75.7
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.2e-198 696.8 486 78.0
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.6e-198 696.4 502 75.9
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.3e-197 693.3 492 74.0
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.3e-197 692.6 490 77.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.0e-197 692.2 479 78.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.9e-196 689.5 496 74.4
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 4.3e-196 688.3 516 75.0
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-194 682.9 528 72.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 2.4e-194 682.6 500 74.0
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.2e-193 680.2 440 82.3
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.5e-193 679.9 513 72.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.3e-192 676.8 489 73.8
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.8e-192 675.2 475 78.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.7e-190 669.1 496 73.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.0e-189 665.6 502 72.1
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 3.9e-189 665.2 490 75.5
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.1e-188 663.7 508 73.0
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.8e-187 659.1 506 73.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.2e-185 653.7 500 71.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.5e-185 653.3 510 70.0
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.6e-185 652.5 510 70.2
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 3.4e-185 652.1 510 69.6
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.5e-185 651.7 494 71.1
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.2e-184 649.4 510 69.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 3.8e-184 648.7 511 69.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 8.4e-184 647.5 519 69.9
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.1e-183 647.1 510 69.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 7.1e-183 644.4 511 69.1
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-182 643.7 498 70.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.0e-181 639.0 496 70.2
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 8.7e-181 637.5 491 71.1
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.4e-180 634.4 426 80.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.2e-179 632.9 506 68.2
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.7e-179 632.1 494 69.8
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.4e-178 629.4 491 69.0
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 4.1e-178 628.6 480 70.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 4.1e-178 628.6 492 69.3
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 5.3e-178 628.2 493 70.6
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-177 627.1 491 67.8
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.7e-176 623.2 498 66.1
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 8.5e-176 620.9 495 70.3
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.7e-173 611.3 441 76.0
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.7e-173 611.3 506 65.4
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.4e-170 603.6 498 66.9
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 8.8e-165 584.3 529 65.4
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.1e-158 563.1 389 77.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.0e-157 559.3 498 65.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.3e-154 548.5 363 82.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.0e-153 546.6 486 64.0
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.5e-148 528.1 471 60.9
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.9e-143 513.5 496 61.3
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 3.2e-143 512.7 503 58.4
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 7.7e-137 491.5 453 62.5
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.7e-136 490.3 495 58.8
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.8e-133 480.3 375 73.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.9e-131 473.0 450 57.8
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 4.9e-131 472.2 402 63.7
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.6e-127 458.8 402 67.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.0e-120 438.0 497 56.1
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-111 407.5 382 62.6
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.5e-111 407.5 382 62.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 3.1e-101 373.2 425 54.4
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.3e-99 367.9 254 83.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 7.1e-98 362.1 212 84.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.4e-90 337.8 434 46.3
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 6.0e-89 332.4 324 55.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.1e-86 323.9 440 46.6
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-85 319.7 225 76.4
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 3.3e-79 300.1 415 44.1
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.1e-78 297.4 221 72.4
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.7e-63 246.1 202 70.3
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 9.7e-63 245.4 362 43.4
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.0e-59 235.3 265 55.1
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.4e-58 231.5 398 37.9
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 7.7e-52 209.1 132 81.1
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-51 208.4 164 69.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.6e-49 201.4 339 38.6
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-46 191.4 290 46.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-39 167.9 102 82.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.7e-38 163.7 97 85.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.7e-36 156.0 96 71.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.7e-30 137.1 93 75.3
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.4e-29 134.4 141 58.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.8e-24 116.3 98 61.2
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 6.8e-24 116.3 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 5.4e-21 106.7 122 52.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.2e-14 84.7 66 68.2
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 5.4e-13 80.1 71 64.8
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.8e-12 76.3 60 65.0
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.8e-12 76.3 60 65.0
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.3e-10 69.7 60 60.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 5.2e-08 63.5 62 61.3
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.9e-06 57.8 50 64.0
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.9e-06 57.8 179 31.8
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.9e-06 57.0 38 81.6


User provided reference genes

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