Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1184.1 600 100.0
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1182.2 599 100.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 1.9e-291 1005.4 599 85.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 4.0e-273 944.5 599 80.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 1.2e-272 943.0 599 79.8
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 1.3e-268 929.5 599 78.3
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 4.2e-267 924.5 599 77.1
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 1.4e-265 919.5 600 77.5
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 2.4e-262 908.7 599 77.0
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 3.8e-260 901.4 692 70.7
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 5.0e-260 901.0 600 75.5
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.5e-259 898.7 602 76.9
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 3.6e-258 894.8 598 75.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 8.0e-258 893.6 600 75.5
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 4.0e-257 891.3 599 75.3
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 6.4e-255 884.0 599 75.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 8.3e-255 883.6 601 74.9
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 8.3e-255 883.6 599 75.3
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 1.8e-254 882.5 607 74.6
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 5.0e-252 874.4 639 70.9
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.5e-251 872.8 600 74.5
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 2.8e-250 868.6 599 73.3
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 3.4e-248 861.7 602 72.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 9.8e-248 860.1 599 72.6
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.2e-247 859.0 613 71.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.9e-247 858.6 599 72.6
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 3.2e-246 855.1 600 72.7
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.1e-246 854.7 602 72.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.7e-245 852.0 611 72.5
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.7e-245 852.0 599 73.3
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 3.5e-245 851.7 600 73.2
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.6e-245 851.3 613 71.3
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 3.9e-244 848.2 599 72.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 4.7e-242 841.3 600 72.5
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 5.2e-241 837.8 599 72.1
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 3.4e-240 835.1 591 71.9
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.2e-237 826.6 607 70.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 5.1e-236 821.2 599 68.4
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.2e-234 816.6 599 70.3
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 3.8e-231 805.1 615 68.9
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.2e-230 802.0 599 67.1
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 4.1e-230 801.6 619 67.9
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.7e-228 796.2 599 67.4
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 3.9e-228 795.0 516 80.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.9e-228 795.0 763 57.5
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.3e-227 791.6 551 72.8
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 4.7e-226 788.1 600 67.2
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 8.1e-226 787.3 599 67.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 1.1e-225 786.9 599 66.9
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 2.9e-223 778.9 600 67.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 1.2e-221 773.5 599 65.4
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.6e-221 771.5 601 66.7
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.3e-220 770.0 611 67.3
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 3.0e-220 768.8 651 62.7
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.1e-218 762.7 599 63.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.1e-218 762.7 599 64.1
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 6.9e-217 757.7 635 62.0
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 1.5e-216 756.5 599 63.9
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 2.0e-216 756.1 599 62.9
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 4.5e-216 755.0 591 66.0
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 2.2e-215 752.7 601 64.2
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 2.2e-215 752.7 605 62.6
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 1.4e-214 750.0 601 64.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 9.3e-214 747.3 548 69.2
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.6e-213 746.5 591 65.1
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.7e-213 745.7 599 63.4
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 3.5e-213 745.3 605 62.3
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 3.5e-213 745.3 605 62.3
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 4.3e-211 738.4 601 62.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.3e-210 736.9 600 62.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.4e-209 733.4 599 63.9
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.4e-209 732.6 600 62.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.2e-208 730.3 599 63.4
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 3.3e-203 712.2 587 63.9
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 3.7e-202 708.8 600 60.7
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 3.7e-202 708.8 449 79.5
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.4e-201 706.8 599 60.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.8e-201 706.4 487 75.2
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 9.0e-201 704.1 599 60.8
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 7.6e-200 701.0 669 55.5
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 8.4e-199 697.6 600 60.0
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.5e-198 696.0 619 58.6
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.0e-196 689.1 589 62.5
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 8.7e-196 687.6 599 61.1
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.3e-194 683.7 599 59.1
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 3.9e-188 662.1 600 57.2
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.8e-185 653.3 617 55.4
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 5.9e-184 648.3 602 56.3
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 5.1e-180 635.2 548 59.5
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 4.5e-176 622.1 687 51.2
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.8e-172 610.1 488 65.8
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 3.0e-156 556.2 631 49.3
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 4.4e-155 552.4 377 76.1
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.8e-153 547.0 411 69.3
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.2e-150 535.8 413 67.3
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 3.7e-146 522.7 612 49.8
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 2.9e-143 513.1 319 82.8
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 4.9e-138 495.7 600 48.7
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.8e-133 479.9 634 45.9
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.2e-115 421.4 349 62.8
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 6.2e-93 345.9 268 65.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 1.2e-80 305.1 614 35.8
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.1e-79 299.7 210 74.3
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 5.1e-71 273.1 261 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 8.8e-71 272.3 604 34.4
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 6.9e-68 262.7 231 58.0
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 8.5e-66 255.8 593 32.9
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.5e-59 233.8 149 77.9
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.7e-58 231.5 151 74.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 8.5e-58 229.2 594 32.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 6.1e-56 223.0 623 31.9
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 8.0e-56 222.6 233 54.1
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 2.3e-47 194.5 157 59.9
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.0e-39 169.1 120 65.8
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 8.8e-39 166.0 108 72.2
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 9.8e-38 162.5 132 60.6
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.7e-37 161.8 118 66.1
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 9.1e-36 156.0 181 48.1
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.9e-34 151.0 294 38.4
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.3e-33 147.5 252 41.3
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-32 144.4 195 41.5
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.6e-30 137.9 223 40.4
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.4e-28 131.3 143 58.7
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-27 126.7 430 28.4
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-24 117.9 120 55.8
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 8.9e-23 112.8 151 43.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 3.4e-22 110.9 84 75.0
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.4e-22 110.5 75 64.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.2e-21 108.2 105 59.0
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.1e-15 87.8 69 60.9
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 6.8e-15 86.7 58 70.7
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 7.5e-14 83.2 67 59.7
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 2.9e-13 81.3 130 42.3
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 1.9e-12 78.6 130 40.8
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.4e-12 78.2 114 42.1
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 4.6e-11 73.9 486 22.6
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 7.8e-11 73.2 239 30.1
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 2.5e-09 68.2 90 43.3
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 5.2e-07 60.5 90 40.0
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.2e-06 59.3 83 49.4


User provided reference genes

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