Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2012_0022 Quercus lobata HOM05D000252 ORTHO05D006173 2.3e-41 171.8 86 100.0
CiPaw.11G106500 Carya illinoinensis HOM05D000252 ORTHO05D006173 5.0e-20 100.9 67 74.6
Ciclev10001762m.g Citrus clementina HOM05D000252 ORTHO05D006173 2.5e-19 98.6 67 76.1
Cfa010656 Carpinus fangiana HOM05D000252 ORTHO05D006173 3.2e-19 98.2 67 74.6
Thecc.04G309700 Theobroma cacao HOM05D000252 ORTHO05D006173 4.2e-19 97.8 67 70.1
Atru.chr9.1817 Acer truncatum HOM05D000252 ORTHO05D006173 2.3e-17 92.0 67 70.1
CANSAT01G0545 Cannabis sativa HOM05D000252 ORTHO05D006173 3.0e-17 91.7 66 68.2
CSS0014928 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D006173 4.0e-17 91.3 85 55.3
Gorai.005G070800 Gossypium raimondii HOM05D000252 ORTHO05D006173 4.0e-17 91.3 86 55.8
GSVIVG01035561001 Vitis vinifera HOM05D000252 ORTHO05D006173 4.0e-17 91.3 66 66.7
Sed0009717 Sechium edule HOM05D000252 ORTHO05D006173 6.8e-17 90.5 67 64.2
Manes.01G013300 Manihot esculenta HOM05D000252 ORTHO05D006173 8.8e-17 90.1 64 70.3
Gohir.D02G062900 Gossypium hirsutum HOM05D000252 ORTHO05D006173 2.0e-16 89.0 86 54.7
Cpa.g.sc87.4 Carica papaya HOM05D000252 ORTHO05D006173 2.6e-16 88.6 67 64.2
Potri.001G453500 Populus trichocarpa HOM05D000252 ORTHO05D006173 3.4e-16 88.2 66 65.2
Sed0023253 Sechium edule HOM05D000252 ORTHO05D006173 3.4e-16 88.2 67 61.2
Actinidia25893 Actinidia chinensis HOM05D000252 ORTHO05D006173 5.7e-16 87.4 85 52.9
Prupe.8G264400 Prunus persica HOM05D000252 ORTHO05D006173 7.5e-16 87.0 86 55.8
ClCG01G007270 Citrullus lanatus HOM05D000252 ORTHO05D006173 2.2e-15 85.5 67 61.2
MD15G1141600 Malus domestica HOM05D000252 ORTHO05D006173 2.2e-15 85.5 86 54.7
QL07p028735 Quercus lobata HOM05D000252 ORTHO05D006173 2.2e-15 85.5 105 52.4
COL.COLO4_34295 Corchorus olitorius HOM05D000252 ORTHO05D006173 3.7e-15 84.7 83 53.0
Sabra16G0306700 Salix brachista HOM05D000252 ORTHO05D006173 3.7e-15 84.7 66 63.6
FvH4_6g28040 Fragaria vesca HOM05D000252 ORTHO05D006173 4.8e-15 84.3 67 64.2
FAN09G0108 Fragaria x ananassa HOM05D000252 ORTHO05D006173 4.8e-15 84.3 67 64.2
FAN14G4665 Fragaria x ananassa HOM05D000252 ORTHO05D006173 4.8e-15 84.3 67 64.2
vmacro00029 Vaccinium macrocarpon HOM05D000252 ORTHO05D006173 4.8e-15 84.3 85 54.1
TAR629G1221 Trochodendron aralioides HOM05D000252 ORTHO05D006173 6.3e-15 84.0 85 49.4
Lj2C148T2 Lonicera japonica HOM05D000252 ORTHO05D006173 8.3e-15 83.6 66 59.1
CsaV3_5G018710 Cucumis sativus L. HOM05D000252 ORTHO05D006173 1.4e-14 82.8 67 59.7
RcHm_v2.0_Chr2g0131741 Rosa chinensis HOM05D000252 ORTHO05D006173 2.4e-14 82.0 71 57.7
RcHm_v2.0_Chr7g0229511 Rosa chinensis HOM05D000252 ORTHO05D006173 2.4e-14 82.0 76 55.3
Rhsim02G0119800 Rhododendron simsii HOM05D000252 ORTHO05D006173 3.1e-14 81.6 85 49.4
EL10Ac7g17138 Beta vulgaris HOM05D000252 ORTHO05D006173 4.1e-14 81.3 65 58.5
Lj1g0001797 Lotus japonicus HOM05D000252 ORTHO05D006173 4.1e-14 81.3 63 66.7
RcHm_v2.0_Chr5g0041951 Rosa chinensis HOM05D001077 ORTHO05D006173 5.4e-14 80.9 71 56.3
RcHm_v2.0_Chr6g0247031 Rosa chinensis HOM05D000252 ORTHO05D006173 5.4e-14 80.9 71 56.3
VMungo1309G0630 Vigna mungo HOM05D000252 ORTHO05D006173 7.0e-14 80.5 74 56.8
MSTRG.14758 Avicennia marina HOM05D000252 ORTHO05D006173 9.1e-14 80.1 83 49.4
AUR62029802 Chenopodium quinoa HOM05D000252 ORTHO05D006173 9.1e-14 80.1 83 51.8
Lsat_1_v5_gn_5_112420 Lactuca sativa HOM05D000252 ORTHO05D006173 9.1e-14 80.1 67 56.7
PSO566G0118 Papaver somniferum HOM05D000252 ORTHO05D006173 9.1e-14 80.1 66 54.5
PGSC0003DMG400008940 Solanum tuberosum HOM05D000252 ORTHO05D006173 9.1e-14 80.1 85 50.6
AUR62006449 Chenopodium quinoa HOM05D000252 ORTHO05D006173 1.2e-13 79.7 85 49.4
AUR62026982 Chenopodium quinoa HOM05D000252 ORTHO05D006173 1.2e-13 79.7 85 49.4
Oeu021515.1 Olea europaea HOM05D000252 ORTHO05D006173 1.2e-13 79.7 66 59.1
TAR622G0972 Trochodendron aralioides HOM05D000252 ORTHO05D006173 1.2e-13 79.7 66 57.6
RcHm_v2.0_Chr7g0229671 Rosa chinensis HOM05D001214 ORTHO05D006173 1.6e-13 79.3 75 54.7
Solyc09g010150.4 Solanum lycopersicum HOM05D000252 ORTHO05D006173 1.6e-13 79.3 66 60.6
Lalb_Chr23g0271541 Lupinus albus HOM05D000252 ORTHO05D006173 2.0e-13 79.0 66 62.1
PSO782G5386 Papaver somniferum HOM05D000252 ORTHO05D006173 2.0e-13 79.0 66 53.0
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 2.7e-13 78.6 66 57.6
Migut.H01382 Erythranthe guttata HOM05D000252 ORTHO05D006173 2.7e-13 78.6 64 56.2
Sopen09g004890 Solanum pennellii HOM05D000252 ORTHO05D006173 3.5e-13 78.2 66 60.6
CAN.G397.84 Capsicum annuum HOM05D000252 ORTHO05D006173 4.5e-13 77.8 85 48.2
Cc09_g09590 Coffea canephora HOM05D000252 ORTHO05D006173 5.9e-13 77.4 65 53.8
Eucgr.E01120 Eucalyptus grandis HOM05D000252 ORTHO05D006173 7.7e-13 77.0 66 56.1
FAN05G2628 Fragaria x ananassa HOM05D001214 ORTHO05D006173 7.7e-13 77.0 60 65.0
Nitab4.5_0000573g0180 Nicotiana tabacum HOM05D000252 ORTHO05D006173 7.7e-13 77.0 85 47.1
Eucgr.L01276 Eucalyptus grandis HOM05D000252 ORTHO05D006173 1.0e-12 76.6 63 57.1
RcHm_v2.0_Chr7g0230161 Rosa chinensis HOM05D000252 ORTHO05D006173 1.3e-12 76.3 75 53.3
Eucgr.E01111 Eucalyptus grandis HOM05D000252 ORTHO05D006173 1.7e-12 75.9 66 54.5
Medtr3g091070 Medicago truncatula HOM05D000252 ORTHO05D006173 1.7e-12 75.9 63 63.5
Os09g0346600 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D006173 1.7e-12 75.9 83 50.6
Phvul.009G054600 Phaseolus vulgaris HOM05D000252 ORTHO05D006173 1.7e-12 75.9 74 54.1
Medtr3g009190 Medicago truncatula HOM05D000252 ORTHO05D006173 2.9e-12 75.1 63 61.9
Medtr6g453040 Medicago truncatula HOM05D000252 ORTHO05D006173 2.9e-12 75.1 63 61.9
Peaxi162Scf00069g00511 Petunia axillaris HOM05D000252 ORTHO05D006173 3.8e-12 74.7 85 45.9
TWI81G1050 Tripterygium wilfordii HOM05D000252 ORTHO05D006173 3.8e-12 74.7 67 53.7
HanXRQChr06g0172631 Helianthus annuus HOM05D000252 ORTHO05D006173 5.0e-12 74.3 66 56.1
HPP92_005571 Vanilla planifolia HOM05D000252 ORTHO05D006173 5.0e-12 74.3 64 57.8
Ah.08g209090 Amaranthus hybridus HOM05D000252 ORTHO05D006173 6.6e-12 73.9 66 54.5
Aqoxy2G02648 Aquilegia oxysepala HOM05D000252 ORTHO05D006173 6.6e-12 73.9 76 51.3
BcaNung02217 Brassica carinata HOM05D000252 ORTHO05D006173 8.6e-12 73.6 64 57.8
Ca_16687_v3 Cicer arietinum L. HOM05D000252 ORTHO05D006173 1.1e-11 73.2 63 60.3
Thhalv10013899m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 1.1e-11 73.2 62 56.5
Glyma.04G237500 Glycine max HOM05D000252 ORTHO05D006173 1.5e-11 72.8 63 57.1
Nn2g15901 Nelumbo nucifera HOM05D000252 ORTHO05D006173 2.5e-11 72.0 65 50.8
Peaxi162Scf01205g00153 Petunia axillaris HOM05D000252 ORTHO05D006173 2.5e-11 72.0 85 44.7
Sc02g0006450 Simmondsia chinensis HOM05D000252 ORTHO05D006173 3.3e-11 71.6 66 53.0
AT5G15940 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 4.2e-11 71.2 62 56.5
Glyma.06G126500 Glycine max HOM05D000252 ORTHO05D006173 4.2e-11 71.2 63 57.1
Sc02g0006460 Simmondsia chinensis HOM05D000252 ORTHO05D006173 4.2e-11 71.2 66 51.5
THA.LOC104816406 Tarenaya hassleriana HOM05D000252 ORTHO05D006173 4.2e-11 71.2 67 50.7
AL6G13700 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 5.5e-11 70.9 63 57.1
arahy.Tifrunner.gnm1.ann1.6GL1RL Arachis hypogaea HOM05D000252 ORTHO05D006173 5.5e-11 70.9 72 52.8
Sp6g28170 Schrenkiella parvula HOM05D000252 ORTHO05D006173 7.2e-11 70.5 62 56.5
arahy.Tifrunner.gnm1.ann1.VK1FTJ Arachis hypogaea HOM05D000252 ORTHO05D006173 9.5e-11 70.1 72 52.8
FAN02G2190 Fragaria x ananassa HOM05D000479 ORTHO05D017027 9.5e-11 70.1 75 48.0
MBI04_g45215_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D006173 1.2e-10 69.7 67 49.3
CARHR197370 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.6e-10 69.3 62 53.2
FAN05G1823 Fragaria x ananassa HOM05D000479 ORTHO05D017027 2.1e-10 68.9 75 48.0
arahy.Tifrunner.gnm1.ann1.32U02B Arachis hypogaea HOM05D000252 ORTHO05D006173 2.8e-10 68.6 76 48.7
Thhalv10007998m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 3.6e-10 68.2 63 54.0
Thhalv10013855m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 3.6e-10 68.2 61 54.1
ATR0824G073 Amborella trichopoda HOM05D000252 ORTHO05D006173 4.7e-10 67.8 66 48.5
BcaNung02216 Brassica carinata HOM05D000252 ORTHO05D006173 4.7e-10 67.8 64 53.1
Sc02g0006480 Simmondsia chinensis HOM05D000252 ORTHO05D006173 6.1e-10 67.4 66 50.0
BraA02t05302Z Brassica rapa HOM05D000252 ORTHO05D006173 8.0e-10 67.0 64 56.2
Carub.0006s0303 Capsella rubella HOM05D000252 ORTHO05D006173 8.0e-10 67.0 63 55.6
Carub.0006s1413 Capsella rubella HOM05D000252 ORTHO05D006173 8.0e-10 67.0 85 42.4
CARHR209200 Cardamine hirsuta HOM05D000252 ORTHO05D006173 8.0e-10 67.0 65 50.8
Aa31LG11G13660 Aethionema arabicum HOM05D000252 ORTHO05D006173 1.0e-09 66.6 64 50.0
BcaC03g18461 Brassica carinata HOM05D000252 ORTHO05D006173 1.4e-09 66.2 64 53.1
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 1.8e-09 65.9 63 52.4
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 1.8e-09 65.9 63 52.4
BraA10t45249Z Brassica rapa HOM05D000252 ORTHO05D006173 2.3e-09 65.5 63 52.4
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 3.0e-09 65.1 63 52.4
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 4.0e-09 64.7 64 53.1
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 4.0e-09 64.7 64 53.1
BcaC06g32112 Brassica carinata HOM05D000252 ORTHO05D006173 5.2e-09 64.3 63 52.4
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 5.2e-09 64.3 64 53.1
Zm00001eb310490 Zea mays HOM05D000252 ORTHO05D006173 5.2e-09 64.3 65 49.2
Mapoly0004s0285 Marchantia polymorpha HOM05D000252 ORTHO05D006173 8.9e-09 63.5 63 50.8
SEGI_02143 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 1.2e-08 63.2 63 52.4
AT5G04070 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 2.6e-08 62.0 63 54.0
AL6G26820 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 3.4e-08 61.6 62 50.0
unitig_61.g26060 Utricularia gibba HOM05D000252 ORTHO05D006173 3.7e-07 58.2 67 44.8
CBR_g24314 Chara braunii HOM05D000252 ORTHO05D006173 6.3e-07 57.4 64 45.3
Aa31LG1G21250 Aethionema arabicum HOM05D000252 ORTHO05D006173 8.3e-07 57.0 63 50.8
AagrBONN_evm.TU.Sc2ySwM_228.404 Anthoceros agrestis HOM05D000252 ORTHO05D006173 1.4e-06 56.2 64 50.0
Sp6g38670 Schrenkiella parvula HOM05D000252 ORTHO05D006173 1.8e-06 55.8 63 47.6
SMO259G0014 Selaginella moellendorffii HOM05D000252 ORTHO05D006173 2.4e-06 55.5 57 50.9
Pp3c26_3200 Physcomitrium patens HOM05D000252 ORTHO05D006173 9.2e-06 53.5 71 38.0


User provided reference genes

Program Settings