Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2012_0001 Quercus lobata HOM05D001765 ORTHO05D003527 2.4e-41 171.8 90 100.0
QL93p2012_0027 Quercus lobata HOM05D001765 ORTHO05D003527 1.1e-36 156.4 83 100.0
MELO3C005810.2 Cucumis melo HOM05D001765 ORTHO05D003527 2.7e-16 88.6 83 55.4
CsaV3_5G001370 Cucumis sativus L. HOM05D001765 ORTHO05D003527 6.0e-16 87.4 83 54.2
CiPaw.11G106600 Carya illinoinensis HOM05D001765 ORTHO05D003527 7.8e-16 87.0 83 56.6
Prupe.5G136900 Prunus persica HOM05D001765 ORTHO05D003527 7.8e-16 87.0 83 56.6
Haze_03592 Corylus avellana HOM05D001765 ORTHO05D003527 1.0e-15 86.7 50 80.0
MD06G1126400 Malus domestica HOM05D001765 ORTHO05D003527 6.6e-15 84.0 83 53.0
ClCG01G001250 Citrullus lanatus HOM05D001765 ORTHO05D003527 1.5e-14 82.8 83 51.8
CANSAT21G2548 Cannabis sativa HOM05D001765 ORTHO05D003527 4.3e-14 81.3 54 68.5
Aqoxy5G04386 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 9.6e-14 80.1 58 65.5
Nn1g00491 Nelumbo nucifera HOM05D001765 ORTHO05D003527 1.6e-13 79.3 55 65.5
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla HOM05D001765 ORTHO05D003527 6.2e-13 77.4 55 65.5
Sed0027749 Sechium edule HOM05D001765 ORTHO05D003527 6.2e-13 77.4 62 54.8
RcHm_v2.0_Chr7g0188041 Rosa chinensis HOM05D001765 ORTHO05D003527 1.1e-12 76.6 83 47.0
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 1.1e-12 76.6 53 64.2
Dinv12396 Davidia involucrata HOM05D001765 ORTHO05D003527 3.1e-12 75.1 55 61.8
FAN04G1154 Fragaria x ananassa HOM05D000258 ORTHO05D000153 4.0e-12 74.7 83 45.8
Actinidia22239 Actinidia chinensis HOM05D001765 ORTHO05D003527 5.3e-12 74.3 52 65.4
Nitab4.5_0000450g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 1.2e-11 73.2 54 61.1
EL10Ac9g22070 Beta vulgaris HOM05D001765 ORTHO05D003527 1.5e-11 72.8 56 64.3
FAN13G1501 Fragaria x ananassa HOM05D000258 ORTHO05D000153 1.5e-11 72.8 83 44.6
TWI60G1724 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 1.5e-11 72.8 57 59.6
vmacro11471 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 2.6e-11 72.0 54 61.1
DCAR_019220 Daucus carota HOM05D001765 ORTHO05D003527 3.4e-11 71.6 56 57.1
CSS0000240 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 7.6e-11 70.5 54 59.3
FvH4_5g10193 Fragaria vesca HOM05D001765 ORTHO05D003527 7.6e-11 70.5 83 43.4
Nitab4.5_0006317g0030 Nicotiana tabacum HOM05D001765 ORTHO05D003527 7.6e-11 70.5 54 59.3
Potri.001G453400 Populus trichocarpa HOM05D001765 ORTHO05D003527 7.6e-11 70.5 83 43.4
Sed0026089 Sechium edule HOM05D001765 ORTHO05D003527 7.6e-11 70.5 62 54.8
PGR031G0625 Punica granatum HOM05D001765 ORTHO05D003527 9.9e-11 70.1 84 47.6
Cc08_g05160 Coffea canephora HOM05D001765 ORTHO05D003527 1.3e-10 69.7 54 59.3
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.3e-10 69.7 55 58.2
Peaxi162Scf00779g00211 Petunia axillaris HOM05D001765 ORTHO05D003527 1.7e-10 69.3 54 57.4
GSVIVG01019710001 Vitis vinifera HOM05D001765 ORTHO05D003527 1.7e-10 69.3 83 48.2
Cpa.g.sc37.116 Carica papaya HOM05D001765 ORTHO05D003527 2.2e-10 68.9 84 44.0
AUR62012884 Chenopodium quinoa HOM05D001765 ORTHO05D003527 2.9e-10 68.6 51 62.7
Aa31LG4G4230 Aethionema arabicum HOM05D001765 ORTHO05D003527 3.8e-10 68.2 84 42.9
Atru.chr9.1818 Acer truncatum HOM05D001765 ORTHO05D003527 4.9e-10 67.8 56 55.4
THA.LOC104823621 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 6.4e-10 67.4 54 61.1
BraA07t31525Z Brassica rapa HOM05D001765 ORTHO05D003527 8.4e-10 67.0 83 41.0
COL.COLO4_10860 Corchorus olitorius HOM05D001765 ORTHO05D003527 8.4e-10 67.0 52 61.5
Eucgr.D02536 Eucalyptus grandis HOM05D001765 ORTHO05D003527 8.4e-10 67.0 50 60.0
Sabra16G0306500 Salix brachista HOM05D001765 ORTHO05D003527 8.4e-10 67.0 83 41.0
Hund00380 Selenicereus undatus HOM05D001765 ORTHO05D003527 8.4e-10 67.0 51 64.7
AUR62027108 Chenopodium quinoa HOM05D001765 ORTHO05D003527 1.4e-09 66.2 51 60.8
Gohir.A12G243600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.4e-09 65.5 56 58.9
Gorai.008G262200 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.4e-09 65.5 56 58.9
Ciclev10022684m.g Citrus clementina HOM05D001765 ORTHO05D003527 3.2e-09 65.1 64 51.6
Gohir.D12G244600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 3.2e-09 65.1 56 57.1
Ah.01g023940 Amaranthus hybridus HOM05D001765 ORTHO05D003527 4.2e-09 64.7 57 56.1
BolC6t38486H Brassica oleracea HOM05D001765 ORTHO05D003527 4.2e-09 64.7 83 41.0
BraA07t30598Z Brassica rapa HOM05D001765 ORTHO05D003527 4.2e-09 64.7 83 41.0
Carub.0002s2071 Capsella rubella HOM05D001765 ORTHO05D003527 5.4e-09 64.3 85 45.9
CARHR067050 Cardamine hirsuta HOM05D001765 ORTHO05D003527 5.4e-09 64.3 83 44.6
A07p39780 Brassica napus HOM05D001765 ORTHO05D003527 7.1e-09 63.9 85 43.5
Sp5g29140 Schrenkiella parvula HOM05D001765 ORTHO05D003527 7.1e-09 63.9 85 45.9
SGA_v2.0_scaffold20G09260 Striga asiatica HOM05D001765 ORTHO05D003527 7.1e-09 63.9 60 53.3
PSO782G3477 Papaver somniferum HOM05D001765 ORTHO05D003527 9.3e-09 63.5 54 51.9
Thecc.03G214000 Theobroma cacao HOM05D001765 ORTHO05D003527 9.3e-09 63.5 56 55.4
Migut.E00773 Erythranthe guttata HOM05D001765 ORTHO05D003527 1.2e-08 63.2 66 50.0
Oeu063650.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-08 63.2 64 54.7
C06p48050 Brassica napus HOM05D001765 ORTHO05D003527 1.6e-08 62.8 83 41.0
Duzib068G1454 Durio zibethinus HOM05D001765 ORTHO05D003527 2.1e-08 62.4 52 59.6
Lj2A148G64 Lonicera japonica HOM05D001765 ORTHO05D003527 2.1e-08 62.4 69 49.3
vmacro08521 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 2.1e-08 62.4 58 51.7
AT1G73940 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 2.7e-08 62.0 83 41.0
Thhalv10019277m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 2.7e-08 62.0 87 41.4
Manes.01G000550 Manihot esculenta HOM05D001765 ORTHO05D003527 2.7e-08 62.0 62 48.4
PSO063G6238 Papaver somniferum HOM05D001765 ORTHO05D003527 2.7e-08 62.0 77 41.6
BolC6t39840H Brassica oleracea HOM05D001765 ORTHO05D003527 3.5e-08 61.6 83 39.8
C06p33710 Brassica napus HOM05D001765 ORTHO05D003527 4.6e-08 61.2 85 42.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 7.8e-08 60.5 47 59.6
ATR0579G141 Amborella trichopoda HOM05D001765 ORTHO05D003527 1.0e-07 60.1 52 53.8
AL2G33770 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 1.0e-07 60.1 83 41.0
Duzib084G1229 Durio zibethinus HOM05D001765 ORTHO05D003527 1.0e-07 60.1 56 53.6
CSS0003570 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.3e-07 59.7 40 65.0
CSS0044754 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.3e-07 59.7 40 65.0
unitig_52.g17201 Utricularia gibba HOM05D000742 ORTHO05D000924 3.0e-07 58.5 58 50.0
SalBow1G2231 Salvia bowleyana HOM05D001765 ORTHO05D003527 1.1e-06 56.6 57 52.6
HPP92_020738 Vanilla planifolia HOM05D001765 ORTHO05D003527 1.1e-06 56.6 51 49.0
MSTRG.2000 Avicennia marina HOM05D001765 ORTHO05D003527 4.3e-06 54.7 59 47.5
CDE11G1166 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 5.6e-06 54.3 46 52.2
Os03g0852500 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 5.6e-06 54.3 52 48.1
Zm00001eb210620 Zea mays HOM05D001765 ORTHO05D003527 7.3e-06 53.9 52 46.2


User provided reference genes

Program Settings