Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 2.6e-71 271.9 136 100.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 2.6e-63 245.4 129 96.1
CiPaw.15G142300 Carya illinoinensis HOM05D000135 ORTHO05D000203 5.3e-16 88.2 66 68.2
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 2.1e-12 76.3 52 71.2
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 2.7e-12 75.9 48 75.0
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 2.3e-11 72.8 75 56.0
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 2.3e-11 72.8 48 72.9
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 3.0e-11 72.4 48 75.0
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 3.9e-11 72.0 48 75.0
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 6.7e-11 71.2 52 71.2
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 6.7e-11 71.2 49 73.5
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 8.8e-11 70.9 52 67.3
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 8.8e-11 70.9 58 60.3
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.1e-10 70.5 48 68.8
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.1e-10 70.5 48 68.8
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 2.0e-10 69.7 48 68.8
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 2.6e-10 69.3 54 61.1
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 2.6e-10 69.3 48 68.8
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 2.6e-10 69.3 48 70.8
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 2.6e-10 69.3 48 68.8
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 4.4e-10 68.6 54 59.3
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 5.7e-10 68.2 57 68.4
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 5.7e-10 68.2 48 70.8
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 5.7e-10 68.2 73 50.7
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 7.4e-10 67.8 54 64.8
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 7.4e-10 67.8 48 66.7
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 7.4e-10 67.8 48 70.8
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 7.4e-10 67.8 56 58.9
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 9.7e-10 67.4 54 64.8
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 9.7e-10 67.4 49 69.4
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 62.5
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 1.3e-09 67.0 58 53.4
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 66.7
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 66.7
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 66.7
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 66.7
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 66.7
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.3e-09 67.0 52 61.5
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 1.3e-09 67.0 48 66.7
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.7e-09 66.6 48 66.7
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 2.2e-09 66.2 54 57.4
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 2.2e-09 66.2 54 57.4
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 2.2e-09 66.2 54 57.4
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 2.2e-09 66.2 58 56.9
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 2.2e-09 66.2 48 70.8
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 2.2e-09 66.2 48 68.8
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 2.8e-09 65.9 48 62.5
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 2.8e-09 65.9 48 68.8
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 2.8e-09 65.9 57 56.1
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 2.8e-09 65.9 52 59.6
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 3.7e-09 65.5 58 53.4
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 3.7e-09 65.5 48 60.4
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 3.7e-09 65.5 74 47.3
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 3.7e-09 65.5 54 57.4
Glyma.07G101100 Glycine max HOM05D000135 ORTHO05D000203 3.7e-09 65.5 64 57.8
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 3.7e-09 65.5 48 68.8
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 3.7e-09 65.5 54 59.3
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 3.7e-09 65.5 48 68.8
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 6.3e-09 64.7 50 66.0
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 6.3e-09 64.7 54 57.4
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 6.3e-09 64.7 54 57.4
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 6.3e-09 64.7 50 60.0
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 8.2e-09 64.3 48 64.6
Medtr6g079570 Medicago truncatula HOM05D000135 ORTHO05D000203 1.1e-08 63.9 66 48.5
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 1.1e-08 63.9 58 55.2
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 1.1e-08 63.9 54 59.3
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.4e-08 63.5 48 68.8
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.4e-08 63.5 48 68.8
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 1.4e-08 63.5 52 59.6
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 1.4e-08 63.5 58 50.0
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 1.8e-08 63.2 52 57.7
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 1.8e-08 63.2 54 55.6
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 1.8e-08 63.2 54 57.4
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 2.4e-08 62.8 48 60.4
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 2.4e-08 62.8 48 62.5
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 2.4e-08 62.8 59 49.2
Prupe.7G023700 Prunus persica HOM05D000135 ORTHO05D000203 3.1e-08 62.4 63 54.0
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 4.1e-08 62.0 48 62.5
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 4.1e-08 62.0 65 46.2
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 7.0e-08 61.2 54 53.7
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 7.0e-08 61.2 54 57.4
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 7.0e-08 61.2 54 55.6
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 9.1e-08 60.8 48 62.5
PGSC0003DMG400005745 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.2e-07 60.5 66 51.5
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.2e-07 60.5 52 57.7
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 1.5e-07 60.1 48 60.4
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 2.0e-07 59.7 48 64.6
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.6e-07 59.3 48 62.5
Solyc03g118810.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 3.4e-07 58.9 69 50.7
Sopen03g037760 Solanum pennellii HOM05D000135 ORTHO05D000203 3.4e-07 58.9 69 50.7
Aa31LG7G2860 Aethionema arabicum HOM05D000135 ORTHO05D000203 4.5e-07 58.5 63 46.0
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 4.5e-07 58.5 48 60.4
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 4.5e-07 58.5 48 60.4
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 4.5e-07 58.5 48 60.4
Lalb_Chr09g0330421 Lupinus albus HOM05D000135 ORTHO05D000203 4.5e-07 58.5 63 54.0
MD13G1184700 Malus domestica HOM05D000135 ORTHO05D000203 4.5e-07 58.5 66 50.0
BolC5t30348H Brassica oleracea HOM05D000135 ORTHO05D000203 5.9e-07 58.2 63 47.6
MBI19_g13914_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 5.9e-07 58.2 63 54.0
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 5.9e-07 58.2 51 56.9
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 7.7e-07 57.8 48 54.2
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 7.7e-07 57.8 48 58.3
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 1.0e-06 57.4 47 57.4
Lj9P420T29 Lonicera japonica HOM05D000135 ORTHO05D000203 1.0e-06 57.4 68 47.1
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 1.0e-06 57.4 52 51.9
Dinv07296 Davidia involucrata HOM05D000145 ORTHO05D000203 1.3e-06 57.0 69 46.4
Dinv27613 Davidia involucrata HOM05D000145 ORTHO05D000203 1.3e-06 57.0 69 46.4
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 1.3e-06 57.0 78 48.7
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 1.7e-06 56.6 48 62.5
Carub.0001s1785 Capsella rubella HOM05D000135 ORTHO05D000203 2.2e-06 56.2 63 44.4
CAN.G423.28 Capsicum annuum HOM05D000135 ORTHO05D000203 2.9e-06 55.8 74 43.2
AUR62019110 Chenopodium quinoa HOM05D000135 ORTHO05D000203 3.8e-06 55.5 65 47.7
Peaxi162Scf00207g00006 Petunia axillaris HOM05D000135 ORTHO05D000203 3.8e-06 55.5 64 46.9
PGR083G1003 Punica granatum HOM05D000135 ORTHO05D000203 3.8e-06 55.5 66 48.5
AL1G30580 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 5.0e-06 55.1 63 42.9
AT1G18210 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 5.0e-06 55.1 63 42.9
RcHm_v2.0_Chr7g0178551 Rosa chinensis HOM05D000135 ORTHO05D000203 5.0e-06 55.1 66 50.0
Sed0000275 Sechium edule HOM05D000135 ORTHO05D000203 5.0e-06 55.1 65 46.2
Sed0001375 Sechium edule HOM05D000135 ORTHO05D000203 8.5e-06 54.3 64 51.6
TPR.G28537 Trifolium pratense HOM05D000135 ORTHO05D000203 8.5e-06 54.3 41 61.0


User provided reference genes

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