Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 1.8e-303 1045.0 503 100.0
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 6.4e-293 1010.0 486 99.4
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 1.1e-244 849.7 462 88.3
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 1.2e-241 839.7 484 83.1
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 1.0e-237 826.6 461 85.9
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 2.6e-233 812.0 473 84.6
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 4.1e-223 778.1 482 78.2
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 3.8e-192 675.2 486 67.7
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 2.4e-191 672.5 486 68.1
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 1.8e-181 639.8 484 67.6
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 2.6e-177 625.9 490 66.5
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 3.4e-177 625.5 487 66.5
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 9.9e-177 624.0 501 65.1
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 2.2e-176 622.9 486 65.8
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 5.1e-173 611.7 487 65.5
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 1.9e-172 609.8 486 65.0
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.1e-171 606.3 486 64.8
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.8e-171 605.9 487 64.5
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 2.8e-171 605.9 489 62.8
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 6.2e-171 604.7 495 62.6
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 3.2e-167 592.4 455 64.4
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 1.4e-162 577.0 490 60.8
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 1.4e-162 577.0 490 60.8
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 3.8e-160 568.9 447 65.8
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 1.4e-159 567.0 416 66.3
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 4.2e-159 565.5 500 58.2
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 2.7e-158 562.8 497 56.5
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 3.6e-158 562.4 504 58.1
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 7.9e-158 561.2 494 59.9
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 4.3e-156 555.4 504 57.3
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 1.6e-155 553.5 494 57.9
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 2.4e-154 549.7 498 56.8
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 3.1e-154 549.3 490 59.2
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 5.3e-154 548.5 502 56.2
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 7.7e-153 544.7 495 58.0
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 5.0e-152 542.0 497 55.9
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 5.0e-152 542.0 502 57.4
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 2.7e-150 536.2 495 56.0
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 4.6e-150 535.4 496 55.6
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 2.3e-149 533.1 493 55.4
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 5.1e-149 531.9 494 55.1
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 8.8e-149 531.2 429 61.8
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.3e-148 529.3 496 54.6
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 3.3e-148 529.3 499 53.5
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 1.3e-147 527.3 498 54.8
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 1.7e-147 526.9 495 54.7
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 3.7e-147 525.8 511 55.0
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 3.7e-147 525.8 417 63.3
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 1.4e-146 523.9 495 56.0
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 2.4e-146 523.1 499 53.1
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 4.1e-146 522.3 487 54.2
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 3.8e-144 515.8 503 53.9
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 1.1e-143 514.2 459 57.5
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 5.5e-143 511.9 493 55.8
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 3.6e-142 509.2 498 54.2
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 7.9e-142 508.1 453 56.5
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 1.0e-141 507.7 420 60.0
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 3.0e-141 506.1 488 54.7
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 8.8e-141 504.6 507 52.1
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 2.2e-139 500.0 494 53.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.2e-139 500.0 361 68.1
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 6.3e-139 498.4 478 54.0
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 1.8e-138 496.9 401 62.3
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 3.5e-137 492.7 412 60.9
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 1.5e-135 487.3 486 52.9
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 9.4e-135 484.6 376 61.2
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 2.1e-134 483.4 488 52.5
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 2.1e-134 483.4 431 56.8
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 6.1e-134 481.9 433 56.8
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 2.3e-133 479.9 484 51.4
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 2.0e-132 476.9 473 54.8
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 2.0e-132 476.9 430 57.0
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 7.5e-132 474.9 434 55.8
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 2.8e-131 473.0 445 55.7
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 2.4e-130 469.9 484 52.3
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 2.0e-129 466.8 429 55.2
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 8.5e-128 461.5 416 55.3
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 8.5e-128 461.5 373 60.3
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 2.1e-126 456.8 424 54.7
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 2.7e-126 456.4 425 55.3
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 6.1e-126 455.3 427 54.6
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 1.0e-125 454.5 431 55.0
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 7.5e-124 448.4 402 55.7
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 9.1e-122 441.4 424 54.2
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 9.1e-122 441.4 421 55.1
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 2.0e-121 440.3 402 55.7
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 2.7e-121 439.9 424 54.2
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 3.5e-121 439.5 465 50.8
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 1.3e-120 437.6 402 54.7
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 5.0e-120 435.6 432 53.7
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 6.5e-120 435.3 424 54.0
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.5e-119 434.1 469 49.5
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 3.3e-119 433.0 427 54.1
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 3.3e-119 433.0 427 54.1
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 3.3e-119 433.0 427 54.1
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 4.2e-119 432.6 433 54.3
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 4.7e-118 429.1 408 51.7
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 2.7e-113 413.3 410 52.0
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 5.8e-100 369.0 433 43.6
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.4e-92 343.2 492 42.1
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 1.4e-85 321.2 332 54.5
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 7.1e-82 308.9 361 46.0
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.9e-75 287.0 260 55.8
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 3.8e-75 286.6 389 43.4
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 1.3e-72 278.1 206 61.7
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 2.1e-70 270.8 274 54.4
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 1.2e-65 255.0 476 35.7
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 3.7e-62 243.4 504 34.3
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 7.9e-57 225.7 310 43.2
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 2.9e-51 207.2 388 33.8
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 9.4e-42 175.6 222 45.0
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 3.2e-34 150.6 375 31.5
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 7.2e-34 149.4 375 31.7
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 3.6e-33 147.1 110 65.5
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 8.2e-30 136.0 140 52.9
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 5.3e-29 133.3 132 51.5
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 2.0e-28 131.3 414 28.3
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 7.7e-28 129.4 396 31.3
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.4e-26 125.2 330 34.8
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.5e-23 115.2 268 34.0
Hma1.2p1_0235F.1_g098770 Hydrangea macrophylla HOM05D006399 ORTHO05D007988 2.7e-17 94.4 52 76.9
SGA_v2.0_scaffold109G31082 Striga asiatica HOM05D006399 ORTHO05D007988 1.8e-08 65.1 46 60.9


User provided reference genes

Program Settings