Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p1997_0001 Quercus lobata HOM05D001607 ORTHO05D001893 8.6e-57 223.4 111 100.0
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 2.7e-50 201.8 111 90.1
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 5.1e-49 197.6 110 89.1
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.6e-47 192.6 112 87.5
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 2.1e-47 192.2 111 86.5
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 6.9e-46 187.2 103 87.4
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 2.0e-45 185.7 114 80.7
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 9.9e-45 183.3 111 82.9
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 9.9e-45 183.3 111 82.9
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 9.9e-45 183.3 111 82.9
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 9.9e-45 183.3 111 82.9
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.7e-44 182.6 111 82.9
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 1.7e-44 182.6 116 79.3
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.2e-44 182.2 116 77.6
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 2.2e-44 182.2 111 81.1
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 2.9e-44 181.8 111 82.0
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.9e-44 181.8 111 82.0
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.9e-44 181.8 111 82.0
Cpa.g.sc107.66 Carica papaya HOM05D001607 ORTHO05D001893 8.4e-44 180.3 99 86.9
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 1.4e-43 179.5 113 80.5
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 1.9e-43 179.1 112 80.4
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 1.9e-43 179.1 102 83.3
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 2.4e-43 178.7 113 81.4
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 4.2e-43 177.9 122 77.0
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 4.2e-43 177.9 108 78.7
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 4.2e-43 177.9 100 86.0
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 5.4e-43 177.6 102 82.4
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 7.1e-43 177.2 111 80.2
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 7.1e-43 177.2 99 89.9
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 7.1e-43 177.2 108 79.6
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 9.3e-43 176.8 99 88.9
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.2e-42 176.4 99 83.8
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.2e-42 176.4 105 81.9
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.2e-42 176.4 105 81.9
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 1.2e-42 176.4 105 81.9
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 1.6e-42 176.0 105 81.9
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 1.6e-42 176.0 113 78.8
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 2.7e-42 175.3 111 79.3
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 2.7e-42 175.3 112 79.5
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 2.7e-42 175.3 111 77.5
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 2.7e-42 175.3 111 80.2
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 6.0e-42 174.1 103 84.5
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 6.0e-42 174.1 111 79.3
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 7.8e-42 173.7 111 75.7
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 7.8e-42 173.7 111 78.4
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 7.8e-42 173.7 111 78.4
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.3e-41 172.9 100 85.0
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.3e-41 172.9 101 82.2
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 1.3e-41 172.9 114 76.3
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 1.3e-41 172.9 121 74.4
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 1.7e-41 172.6 111 73.9
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 1.7e-41 172.6 100 85.0
Oeu045396.1 Olea europaea HOM05D001607 ORTHO05D001893 1.7e-41 172.6 102 82.4
Gohir.D08G110724 Gossypium hirsutum HOM05D001607 ORTHO05D001893 2.3e-41 172.2 101 83.2
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 2.3e-41 172.2 106 80.2
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 3.0e-41 171.8 104 83.7
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 3.0e-41 171.8 111 77.5
QL09p013733 Quercus lobata HOM05D001607 ORTHO05D001893 3.0e-41 171.8 85 100.0
Peaxi162Scf00444g00720 Petunia axillaris HOM05D001607 ORTHO05D001893 3.9e-41 171.4 111 76.6
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 3.9e-41 171.4 102 80.4
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 3.9e-41 171.4 100 84.0
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 6.6e-41 170.6 102 81.4
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 6.6e-41 170.6 108 81.5
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 6.6e-41 170.6 104 78.8
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 6.6e-41 170.6 114 77.2
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 8.7e-41 170.2 101 82.2
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 8.7e-41 170.2 100 80.0
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 8.7e-41 170.2 108 78.7
Cfa022709 Carpinus fangiana HOM05D001607 ORTHO05D001893 1.1e-40 169.9 111 78.4
Cfa022711 Carpinus fangiana HOM05D001607 ORTHO05D001893 1.1e-40 169.9 111 78.4
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 1.9e-40 169.1 111 79.3
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 2.5e-40 168.7 105 77.1
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 4.3e-40 167.9 103 76.7
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 4.3e-40 167.9 95 84.2
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 4.3e-40 167.9 111 74.8
Glyma.09G137300 Glycine max HOM05D001607 ORTHO05D001893 5.6e-40 167.5 120 72.5
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 5.6e-40 167.5 93 84.9
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 5.6e-40 167.5 100 82.0
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 7.3e-40 167.2 107 74.8
BcaNung04146 Brassica carinata HOM05D001607 ORTHO05D001893 9.6e-40 166.8 99 80.8
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 1.3e-39 166.4 111 72.1
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 1.3e-39 166.4 99 78.8
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 1.6e-39 166.0 98 81.6
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 2.1e-39 165.6 101 79.2
ClCG00G002820 Citrullus lanatus HOM05D001607 ORTHO05D001893 2.1e-39 165.6 113 76.1
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 2.1e-39 165.6 102 77.5
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 2.1e-39 165.6 106 80.2
CAN.G307.25 Capsicum annuum HOM05D001607 ORTHO05D001893 2.8e-39 165.2 111 75.7
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 2.8e-39 165.2 101 78.2
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 3.6e-39 164.9 95 84.2
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 3.6e-39 164.9 102 77.5
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 3.6e-39 164.9 102 77.5
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 3.6e-39 164.9 102 77.5
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 3.6e-39 164.9 99 77.8
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 3.6e-39 164.9 111 74.8
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 4.8e-39 164.5 129 69.0
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 4.8e-39 164.5 102 77.5
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 4.8e-39 164.5 95 82.1
Sopen00g013600 Solanum pennellii HOM05D001607 ORTHO05D001893 4.8e-39 164.5 111 74.8
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 4.8e-39 164.5 99 79.8
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 6.2e-39 164.1 90 86.7
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 8.1e-39 163.7 99 79.8
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 8.1e-39 163.7 112 76.8
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 8.1e-39 163.7 101 77.2
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.1e-38 163.3 101 77.2
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 1.4e-38 162.9 105 74.3
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 2.4e-38 162.2 99 78.8
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 2.4e-38 162.2 109 72.5
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 4.0e-38 161.4 99 78.8
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 4.0e-38 161.4 99 78.8
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 4.0e-38 161.4 98 79.6
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 4.0e-38 161.4 95 80.0
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 5.3e-38 161.0 108 72.2
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 5.3e-38 161.0 94 83.0
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 6.9e-38 160.6 97 79.4
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 6.9e-38 160.6 99 77.8
arahy.Tifrunner.gnm1.ann1.5UA5U0 Arachis hypogaea HOM05D001607 ORTHO05D001893 9.0e-38 160.2 93 82.8
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 9.0e-38 160.2 93 82.8
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 9.0e-38 160.2 99 77.8
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 9.0e-38 160.2 91 83.5
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 1.5e-37 159.5 101 76.2
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 2.6e-37 158.7 123 69.1
HPP92_006560 Vanilla planifolia HOM05D001607 ORTHO05D001893 2.6e-37 158.7 97 78.4
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 1.9e-35 152.5 92 80.4
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 2.4e-35 152.1 92 79.3
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 7.1e-35 150.6 104 70.2
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 3.5e-34 148.3 119 68.1
CDE08G0131 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 6.0e-34 147.5 93 76.3
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 1.3e-33 146.4 105 70.5
arahy.Tifrunner.gnm1.ann1.5K396S Arachis hypogaea HOM05D001607 ORTHO05D001893 3.9e-33 144.8 117 67.5
Ca_14559_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 5.1e-33 144.4 80 82.5
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 1.9e-32 142.5 80 85.0
Solyc03g025610.3 Solanum lycopersicum HOM05D001607 ORTHO05D001893 7.4e-32 140.6 80 82.5
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 1.3e-31 139.8 107 66.4
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 2.8e-31 138.7 103 66.0
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 3.7e-31 138.3 121 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 1.4e-30 136.3 90 70.0
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 3.1e-30 135.2 89 70.8
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 6.9e-30 134.0 80 78.8
GSVIVG01020947001 Vitis vinifera HOM05D001607 ORTHO05D001893 1.5e-29 132.9 113 63.7
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 2.0e-29 132.5 76 85.5
Cre16.g675350 Chlamydomonas reinhardtii HOM05D001607 ORTHO05D001893 3.4e-29 131.7 111 57.7
Actinidia27741 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.1e-24 116.7 80 75.0
Actinidia28326 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.1e-24 116.7 80 75.0
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 1.9e-19 99.4 98 57.1
SEGI_31249 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 1.0e-17 93.6 52 86.5
arahy.Tifrunner.gnm1.ann1.18M8R5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.9e-17 91.7 90 56.7
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 1.5e-16 89.7 56 76.8
PRCOL_00005219 Prasinoderma coloniale HOM05D001607 ORTHO05D001893 1.4e-14 83.2 92 45.7
Hma1.2p1_1380F.1_g279270 Hydrangea macrophylla HOM05D001607 ORTHO05D001893 6.9e-14 80.9 49 81.6
arahy.Tifrunner.gnm1.ann1.C6CLGC Arachis hypogaea HOM05D001607 ORTHO05D001893 1.2e-13 80.1 57 73.7
Medtr1g101015 Medicago truncatula HOM05D001607 ORTHO05D001893 2.2e-12 75.9 54 68.5
GSVIVG01020954001 Vitis vinifera HOM05D001607 ORTHO05D001893 3.9e-09 65.1 57 61.4
Manes.06G148952 Manihot esculenta HOM05D001607 ORTHO05D001893 1.1e-06 57.0 38 71.1


User provided reference genes

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