Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.0e-72 274.6 135 100.0
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 1.2e-71 273.1 134 100.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 3.0e-59 231.9 134 86.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 1.2e-55 219.9 130 83.1
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 4.4e-55 218.0 134 84.3
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 4.4e-55 218.0 134 79.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 1.1e-53 213.4 135 78.5
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.1e-53 213.4 135 78.5
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 2.0e-52 209.1 131 78.6
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.7e-51 206.1 129 82.2
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 1.7e-51 206.1 128 74.2
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 2.3e-51 205.7 129 79.1
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 6.6e-51 204.1 125 79.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 1.2e-49 199.9 132 75.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 1.6e-49 199.5 133 74.4
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.1e-49 199.1 129 75.2
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.6e-49 198.4 130 76.2
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 4.7e-49 198.0 128 76.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 8.1e-49 197.2 135 72.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 8.1e-49 197.2 135 72.6
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.1e-48 195.3 133 75.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.1e-48 195.3 133 75.9
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 5.2e-48 194.5 128 72.7
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.2e-48 194.5 129 73.6
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 5.2e-48 194.5 129 73.6
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 1.2e-47 193.4 130 74.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.6e-47 192.2 134 72.4
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 2.6e-47 192.2 128 74.2
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 3.4e-47 191.8 134 66.4
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 9.8e-47 190.3 129 70.5
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 1.7e-46 189.5 125 72.8
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 4.9e-46 188.0 134 67.9
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 6.4e-46 187.6 134 68.7
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 1.9e-45 186.0 133 69.2
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.4e-45 185.7 134 64.9
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 4.1e-45 184.9 126 69.8
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 4.1e-45 184.9 126 68.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 5.4e-45 184.5 135 67.4
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 3.5e-44 181.8 134 69.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 4.6e-44 181.4 128 69.5
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.6e-44 181.4 128 68.0
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.6e-44 181.4 131 71.8
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 7.8e-44 180.6 132 65.2
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 1.0e-43 180.3 132 68.9
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.0e-43 180.3 135 70.4
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 5.1e-43 177.9 137 65.7
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 6.6e-43 177.6 130 63.8
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 8.6e-43 177.2 133 66.2
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 8.6e-43 177.2 134 67.9
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 1.5e-42 176.4 137 65.0
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-42 176.4 135 65.2
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 1.5e-42 176.4 135 65.2
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 1.5e-42 176.4 135 65.2
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 1.9e-42 176.0 134 66.4
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 1.9e-42 176.0 138 63.8
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 2.5e-42 175.6 128 65.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 2.5e-42 175.6 132 63.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 3.3e-42 175.3 133 66.2
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 5.6e-42 174.5 137 63.5
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 7.3e-42 174.1 137 63.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 7.3e-42 174.1 137 63.5
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 7.3e-42 174.1 137 63.5
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 7.3e-42 174.1 137 63.5
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 1.2e-41 173.3 172 55.8
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.6e-41 172.9 137 64.2
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 1.6e-41 172.9 135 63.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 2.1e-41 172.6 137 62.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.1e-41 172.6 139 65.5
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 6.2e-41 171.0 132 62.9
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 8.1e-41 170.6 132 62.1
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-40 170.2 139 61.2
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 1.1e-40 170.2 133 63.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.4e-40 169.9 133 65.4
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.8e-40 169.5 137 62.8
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 2.3e-40 169.1 130 64.6
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.1e-40 168.7 134 61.9
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 4.0e-40 168.3 133 60.9
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.8e-40 167.5 132 62.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 2.6e-39 165.6 132 59.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 2.6e-39 165.6 112 71.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 9.9e-39 163.7 134 59.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.3e-38 163.3 134 58.2
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 2.2e-38 162.5 134 61.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 2.9e-38 162.2 120 70.8
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 3.8e-38 161.8 117 70.1
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 8.4e-38 160.6 134 57.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.1e-37 160.2 134 58.2
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.2e-37 158.7 126 62.7
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.1e-37 158.3 132 58.3
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 9.2e-37 157.1 132 59.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-36 156.8 130 60.0
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 6.0e-36 154.5 130 60.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.0e-35 153.7 116 64.7
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.3e-35 153.3 129 61.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 1.5e-34 149.8 130 56.9
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.9e-34 149.4 128 58.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.5e-34 149.1 130 57.7
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 7.3e-34 147.5 125 60.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.2e-33 146.7 130 59.2
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 2.8e-33 145.6 116 63.8
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.2e-33 144.4 130 58.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 8.1e-33 144.1 130 58.5
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.1e-32 143.7 128 54.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 1.4e-32 143.3 167 48.5
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.8e-32 142.9 114 61.4
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.1e-32 142.1 129 52.7
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 6.9e-32 141.0 108 63.9
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.4e-31 138.3 132 53.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.7e-30 136.3 121 58.7
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.2e-30 136.0 108 60.2
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.1e-29 133.7 138 52.2
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.4e-29 133.3 116 56.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 7.1e-29 131.0 126 51.6
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.6e-28 129.8 131 53.4
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.3e-27 126.7 105 58.1
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 2.3e-27 125.9 130 53.1
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 5.1e-27 124.8 105 58.1
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.5e-26 123.2 81 72.8
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.1e-24 117.1 180 41.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.9e-22 108.2 78 61.5
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 3.2e-21 105.5 133 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.2e-21 105.1 75 61.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 3.5e-20 102.1 70 62.9
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 6.0e-20 101.3 89 56.2
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.3e-19 100.1 68 60.3
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 7.4e-18 94.4 56 76.8
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 5.3e-16 88.2 111 45.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.4e-13 79.3 56 75.0
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.3e-09 67.0 53 56.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.8e-08 63.2 75 50.7
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.9e-06 55.1 39 66.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 8.4e-06 54.3 40 62.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.4e-06 54.3 39 64.1


User provided reference genes

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