Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.7e-120 436.0 218 100.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 8.6e-109 397.1 218 93.6
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 3.5e-46 189.1 225 46.7
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.8e-43 179.5 226 45.1
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.7e-43 179.1 236 46.6
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.1e-42 177.6 270 41.9
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.1e-42 177.6 156 56.4
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-41 174.1 191 49.2
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.6e-38 163.7 221 44.8
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.1e-38 161.8 238 40.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 6.1e-38 161.8 224 45.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.0e-37 161.0 232 39.7
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.3e-37 160.6 266 37.6
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.3e-37 159.8 223 43.0
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-37 159.8 223 43.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-37 159.8 223 44.4
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.0e-37 159.5 225 43.6
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 3.9e-37 159.1 162 46.3
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.7e-37 158.3 169 52.1
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 8.7e-37 157.9 230 39.1
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 8.7e-37 157.9 176 44.3
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.7e-37 157.9 193 42.0
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-36 157.5 162 47.5
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-36 157.5 241 40.7
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-36 157.1 238 39.9
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.9e-36 156.8 230 41.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-36 156.8 229 41.5
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.9e-36 156.8 229 41.5
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.5e-36 156.4 162 46.9
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.5e-36 156.4 245 40.4
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 7.4e-36 154.8 162 46.3
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.3e-35 154.1 162 45.7
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.6e-35 153.7 223 41.3
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.6e-35 153.7 172 44.8
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.7e-35 152.5 222 38.7
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 3.7e-35 152.5 179 44.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 3.7e-35 152.5 275 36.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 6.3e-35 151.8 222 40.1
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 6.3e-35 151.8 222 40.1
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 6.3e-35 151.8 222 40.1
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 8.2e-35 151.4 161 46.6
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.4e-34 150.6 162 45.1
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-34 150.6 165 43.6
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.4e-34 149.8 293 34.5
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 3.1e-34 149.4 222 40.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 3.1e-34 149.4 222 40.1
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.1e-34 149.1 162 45.7
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 4.1e-34 149.1 269 35.7
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 5.3e-34 148.7 221 38.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.9e-34 148.3 160 46.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.9e-34 148.3 162 43.8
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 9.1e-34 147.9 221 41.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.1e-34 147.9 178 42.7
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.1e-34 147.9 162 44.4
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 9.1e-34 147.9 165 44.2
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.2e-33 147.5 267 37.1
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.2e-33 147.5 222 39.2
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.2e-33 147.5 163 46.0
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 3.4e-33 146.0 258 39.1
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.0e-32 144.4 161 42.9
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.0e-32 144.4 222 37.8
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.3e-32 144.1 260 35.4
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.9e-32 142.9 258 38.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.9e-32 142.9 258 38.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 5.0e-32 142.1 278 33.8
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 6.5e-32 141.7 278 34.2
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 8.5e-32 141.4 269 34.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 8.5e-32 141.4 262 34.0
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.1e-31 141.0 162 42.6
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.5e-31 139.8 217 38.7
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.2e-31 139.4 280 35.4
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 3.2e-31 139.4 215 40.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.2e-31 139.4 159 47.2
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 5.5e-31 138.7 160 46.2
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 7.2e-31 138.3 160 46.2
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.2e-30 137.5 208 38.0
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.7e-30 136.3 223 38.1
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.0e-29 134.4 172 43.6
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.4e-29 134.0 178 39.3
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.0e-29 132.9 169 44.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.1e-28 131.0 276 33.7
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-28 130.6 209 39.2
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.5e-28 130.6 233 37.8
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.3e-28 129.4 152 44.1
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 5.7e-28 128.6 138 44.9
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 7.4e-28 128.3 216 37.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.4e-28 128.3 203 39.9
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.8e-27 126.3 159 45.3
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.7e-27 125.9 275 34.5
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.1e-26 124.4 193 38.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.4e-26 123.2 164 39.0
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.1e-26 122.9 159 43.4
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 6.9e-26 121.7 166 44.0
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.4e-25 119.4 169 42.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 5.9e-25 118.6 134 47.8
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 7.7e-25 118.2 163 40.5
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.3e-24 117.5 223 37.7
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.9e-24 116.3 131 45.0
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 5.0e-24 115.5 189 36.0
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.4e-23 114.0 178 38.2
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.2e-23 112.8 132 43.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.6e-22 110.5 166 39.2
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 2.7e-22 109.8 166 39.2
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.7e-22 109.0 163 39.3
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.8e-21 107.1 249 33.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.3e-21 106.7 159 41.5
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 3.9e-21 105.9 166 41.0
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 5.2e-21 105.5 173 42.8
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-20 104.0 159 40.9
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.0e-20 103.6 98 49.0
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.6e-20 103.2 141 38.3
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 2.6e-20 103.2 111 47.7
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 4.4e-20 102.4 162 38.9
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.8e-19 99.8 168 41.1
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 4.8e-19 99.0 136 39.7
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.8e-19 99.0 120 43.3
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 6.3e-19 98.6 107 43.0
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 8.2e-19 98.2 112 44.6
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.0e-17 93.6 104 43.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.9e-17 92.0 207 34.8
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.5e-16 88.6 138 42.0
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.9e-15 87.0 188 34.0
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.2e-15 85.9 149 38.3
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.2e-14 84.3 118 38.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.5e-12 77.4 106 38.7
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.4e-12 75.9 96 38.5
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.7e-11 73.9 190 31.1
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 4.8e-11 72.4 103 35.9
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.3e-11 72.0 103 36.9
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.3e-11 72.0 103 36.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-10 70.9 136 30.9
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 5.3e-10 68.9 105 37.1
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.5e-09 65.9 72 48.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.7e-09 65.1 104 34.6
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 3.8e-08 62.8 88 38.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 6.1e-06 55.5 101 38.6
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 6.1e-06 55.5 101 38.6


User provided reference genes

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