Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 8.4e-22 109.4 54 100.0
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 8.4e-22 109.4 54 100.0
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 7.4e-18 96.3 54 81.5
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 9.6e-18 95.9 54 81.5
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 2.8e-17 94.4 54 79.6
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 3.7e-17 94.0 54 77.8
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 6.3e-17 93.2 54 85.2
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 6.3e-17 93.2 54 79.6
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 8.2e-17 92.8 54 77.8
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 1.4e-16 92.0 54 75.9
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.8e-16 91.7 54 81.5
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.8e-16 91.7 54 79.6
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 1.8e-16 91.7 54 75.9
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 3.1e-16 90.9 54 74.1
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 3.1e-16 90.9 54 77.8
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 5.3e-16 90.1 54 75.9
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 5.3e-16 90.1 54 77.8
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 6.9e-16 89.7 54 77.8
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 6.9e-16 89.7 54 77.8
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 9.0e-16 89.4 54 75.9
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 9.0e-16 89.4 54 74.1
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 9.0e-16 89.4 54 74.1
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 1.5e-15 88.6 53 79.2
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 2.0e-15 88.2 54 74.1
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 2.6e-15 87.8 54 75.9
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 2.6e-15 87.8 52 80.8
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 3.4e-15 87.4 53 73.6
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 3.4e-15 87.4 54 70.4
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 4.5e-15 87.0 54 70.4
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 4.5e-15 87.0 54 74.1
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 4.5e-15 87.0 54 75.9
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 1.3e-14 85.5 54 74.1
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 1.7e-14 85.1 55 69.1
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.2e-14 84.7 55 69.1
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 2.2e-14 84.7 54 68.5
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 2.2e-14 84.7 54 70.4
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 2.9e-14 84.3 55 69.1
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 3.8e-14 84.0 54 72.2
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 5.0e-14 83.6 54 72.2
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 5.0e-14 83.6 54 70.4
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 6.5e-14 83.2 54 70.4
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 1.1e-13 82.4 54 70.4
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 4.2e-13 80.5 54 68.5
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 4.2e-13 80.5 54 66.7
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 7.2e-13 79.7 54 68.5
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 9.3e-13 79.3 54 68.5
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 9.3e-13 79.3 54 63.0
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 9.3e-13 79.3 54 68.5
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 1.2e-12 79.0 55 70.9
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 2.1e-12 78.2 57 66.7
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 3.5e-12 77.4 54 63.0
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 6.1e-12 76.6 54 63.0
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 1.0e-11 75.9 54 68.5
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 1.0e-11 75.9 50 70.0
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 1.3e-11 75.5 53 66.0
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 1.3e-11 75.5 53 66.0
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.3e-11 75.5 54 64.8
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 2.3e-11 74.7 53 66.0
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 2.3e-11 74.7 53 66.0
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 6.7e-11 73.2 52 63.5
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 8.7e-11 72.8 51 64.7
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 8.7e-11 72.8 51 64.7
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 8.7e-11 72.8 51 64.7
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 8.7e-11 72.8 51 64.7
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 1.9e-10 71.6 51 62.7
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.9e-10 71.6 51 66.7
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 4.3e-10 70.5 47 68.1
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.3e-10 70.5 47 68.1
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 7.4e-10 69.7 51 64.7
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 7.4e-10 69.7 51 64.7
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 1.3e-09 68.9 51 62.7
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.3e-09 68.9 46 67.4
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 2.2e-09 68.2 51 62.7
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 2.2e-09 68.2 51 62.7
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 3.7e-09 67.4 39 74.4
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 6.3e-09 66.6 47 66.0
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 8.2e-09 66.2 39 74.4
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 8.2e-09 66.2 46 63.0
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 8.2e-09 66.2 46 63.0
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 8.2e-09 66.2 54 63.0
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 3.1e-08 64.3 39 71.8
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 5.0e-06 57.0 52 46.2
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 6.5e-06 56.6 44 54.5


User provided reference genes

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