Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0363_0004 Quercus lobata HOM05D006102 ORTHO05D007550 0.0e+00 1873.6 924 100.0
QL04p037175 Quercus lobata HOM05D006102 ORTHO05D007550 0.0e+00 1795.0 887 100.0
Cfa011148 Carpinus fangiana HOM05D006102 ORTHO05D007550 0.0e+00 1382.9 894 79.5
CiPaw.14G025500 Carya illinoinensis HOM05D006102 ORTHO05D007550 0.0e+00 1325.1 942 72.7
Haze_02710 Corylus avellana HOM05D006102 ORTHO05D007550 0.0e+00 1234.9 782 80.2
Manes.05G049400 Manihot esculenta HOM05D006102 ORTHO05D007550 0.0e+00 1179.1 897 68.1
Dinv43669 Davidia involucrata HOM05D006102 ORTHO05D007550 0.0e+00 1145.6 898 66.4
Thecc.01G384200 Theobroma cacao HOM05D006102 ORTHO05D007550 0.0e+00 1134.8 897 65.8
MD07G1115100 Malus domestica HOM05D006102 ORTHO05D007550 0.0e+00 1118.2 890 66.2
Duzib138G0330 Durio zibethinus HOM05D006102 ORTHO05D007550 0.0e+00 1114.0 901 65.5
Atru.chr5.237 Acer truncatum HOM05D006102 ORTHO05D007550 0.0e+00 1109.7 846 68.3
Lalb_Chr07g0190291 Lupinus albus HOM05D006102 ORTHO05D007550 0.0e+00 1104.4 898 65.6
Ciclev10018476m.g Citrus clementina HOM05D006102 ORTHO05D007550 0.0e+00 1104.0 899 64.8
COL.COLO4_12485 Corchorus olitorius HOM05D006102 ORTHO05D007550 0.0e+00 1100.9 894 64.4
Prupe.2G137200 Prunus persica HOM05D006102 ORTHO05D007550 0.0e+00 1092.8 894 65.8
Gorai.007G088700 Gossypium raimondii HOM05D006102 ORTHO05D007550 0.0e+00 1083.2 898 64.6
Gohir.D11G083100 Gossypium hirsutum HOM05D006102 ORTHO05D007550 0.0e+00 1081.6 898 64.6
GSVIVG01018154001 Vitis vinifera HOM05D006102 ORTHO05D007550 0.0e+00 1077.8 896 64.5
Actinidia12183 Actinidia chinensis HOM05D006102 ORTHO05D007550 6.3e-312 1074.3 895 63.1
CSS0002341 Camellia sinensis var. sinensis HOM05D006102 ORTHO05D007550 2.5e-311 1072.0 899 63.2
TWI59G0915 Tripterygium wilfordii HOM05D006102 ORTHO05D007550 9.5e-311 1070.1 900 63.9
RcHm_v2.0_Chr1g0349071 Rosa chinensis HOM05D006102 ORTHO05D007550 3.7e-310 1068.1 895 63.9
FAN03G1880 Fragaria x ananassa HOM05D006102 ORTHO05D007550 1.1e-309 1066.6 909 62.9
FAN06G2175 Fragaria x ananassa HOM05D006102 ORTHO05D007550 1.1e-309 1066.6 907 62.5
Potri.014G066000 Populus trichocarpa HOM05D006102 ORTHO05D007550 1.4e-309 1066.2 896 63.7
FvH4_7g11041 Fragaria vesca HOM05D006102 ORTHO05D007550 3.1e-309 1065.1 907 62.4
FAN10G3138 Fragaria x ananassa HOM05D006102 ORTHO05D007550 1.2e-308 1063.1 906 62.6
FAN06G2296 Fragaria x ananassa HOM05D006102 ORTHO05D007550 4.9e-307 1057.7 907 62.3
Glyma.03G032900 Glycine max HOM05D006102 ORTHO05D007550 6.5e-307 1057.4 899 63.4
FAN10G3898 Fragaria x ananassa HOM05D006102 ORTHO05D007550 7.1e-306 1053.9 917 61.5
CANSAT56G2478 Cannabis sativa HOM05D006102 ORTHO05D007550 1.6e-305 1052.7 896 64.4
TAR375G0254 Trochodendron aralioides HOM05D006102 ORTHO05D007550 2.1e-305 1052.4 901 62.9
Sabra14G0046000 Salix brachista HOM05D006102 ORTHO05D007550 2.7e-305 1052.0 892 63.2
Lj3g0012088 Lotus japonicus HOM05D006102 ORTHO05D007550 3.5e-305 1051.6 900 62.2
Gohir.A11G078500 Gossypium hirsutum HOM05D006102 ORTHO05D007550 8.7e-304 1047.0 897 63.2
VMungo0331G0964 Vigna mungo HOM05D006102 ORTHO05D007550 1.2e-300 1036.6 901 62.2
Cpa.g.sc49.145 Carica papaya HOM05D006102 ORTHO05D007550 3.4e-300 1035.0 904 62.6
Ca_19854_v3 Cicer arietinum L. HOM05D006102 ORTHO05D007550 3.8e-299 1031.6 895 62.0
arahy.Tifrunner.gnm1.ann1.1V3LDQ Arachis hypogaea HOM05D006102 ORTHO05D007550 1.5e-295 1019.6 898 61.9
ClCG05G000200 Citrullus lanatus HOM05D006102 ORTHO05D007550 7.4e-295 1017.3 897 61.9
Medtr4g027425 Medicago truncatula HOM05D006102 ORTHO05D007550 4.8e-294 1014.6 892 61.4
Psat0s3685g0040 Pisum sativum HOM05D006102 ORTHO05D007550 1.4e-293 1013.1 921 60.3
TPR.G4985 Trifolium pratense HOM05D006102 ORTHO05D007550 1.2e-292 1010.0 892 61.0
arahy.Tifrunner.gnm1.ann1.W52PF9 Arachis hypogaea HOM05D006102 ORTHO05D007550 2.0e-292 1009.2 910 60.8
PGR004G2833 Punica granatum HOM05D006102 ORTHO05D007550 2.6e-292 1008.8 900 60.7
MELO3C005957.2 Cucumis melo HOM05D006102 ORTHO05D007550 3.4e-292 1008.4 901 61.2
Eucgr.D02494 Eucalyptus grandis HOM05D006102 ORTHO05D007550 1.2e-289 1000.0 815 64.0
CsaV3_3G007350 Cucumis sativus L. HOM05D006102 ORTHO05D007550 7.9e-289 997.3 905 60.3
Rhsim07G0031600 Rhododendron simsii HOM05D006102 ORTHO05D007550 1.0e-288 996.9 894 60.0
Sed0013724 Sechium edule HOM05D006102 ORTHO05D007550 1.4e-280 969.9 898 59.7
CAN.G1872.3 Capsicum annuum HOM05D006102 ORTHO05D007550 2.0e-279 966.1 901 58.9
Sopen01g036600 Solanum pennellii HOM05D006102 ORTHO05D007550 5.7e-279 964.5 829 61.6
Solyc01g090860.3 Solanum lycopersicum HOM05D006102 ORTHO05D007550 8.2e-278 960.7 862 59.7
Nn1g00999 Nelumbo nucifera HOM05D006102 ORTHO05D007550 4.7e-273 944.9 920 57.1
DCAR_015878 Daucus carota HOM05D006102 ORTHO05D007550 1.5e-271 939.9 897 57.7
vmacro13446 Vaccinium macrocarpon HOM05D006102 ORTHO05D007550 1.4e-269 933.3 934 55.8
Cc02_g24460 Coffea canephora HOM05D006102 ORTHO05D007550 1.2e-265 920.2 894 56.6
Nitab4.5_0011151g0030 Nicotiana tabacum HOM05D006102 ORTHO05D007550 1.4e-264 916.8 895 57.1
Nitab4.5_0000859g0180 Nicotiana tabacum HOM05D006102 ORTHO05D007550 1.2e-263 913.7 894 56.5
Sc02g0002820 Simmondsia chinensis HOM05D006102 ORTHO05D007550 3.7e-262 908.7 902 56.4
Migut.N01612 Erythranthe guttata HOM05D006102 ORTHO05D007550 2.3e-259 899.4 897 57.4
Hund27378 Selenicereus undatus HOM05D006102 ORTHO05D007550 4.0e-256 888.6 777 61.0
Aqoxy7G00755 Aquilegia oxysepala HOM05D006102 ORTHO05D007550 1.4e-253 880.2 900 54.6
Hma1.2p1_0072F.1_g038370 Hydrangea macrophylla HOM05D006102 ORTHO05D007550 1.7e-251 873.2 775 61.2
EL10Ac1g00837 Beta vulgaris HOM05D006102 ORTHO05D007550 3.8e-251 872.1 836 57.5
SGA_v2.0_scaffold11G05526 Striga asiatica HOM05D006102 ORTHO05D007550 8.6e-251 870.9 928 54.2
Peaxi162Scf00803g00223 Petunia axillaris HOM05D006102 ORTHO05D007550 2.1e-249 866.3 902 54.3
AL6G53450 Arabidopsis lyrata HOM05D006102 ORTHO05D007550 2.2e-246 856.3 756 61.2
Phvul.010G071766 Phaseolus vulgaris HOM05D006102 ORTHO05D007550 1.4e-245 853.6 613 72.6
Thhalv10028362m.g Eutrema salsugineum HOM05D006102 ORTHO05D007550 2.4e-245 852.8 684 64.8
PSO017G2680 Papaver somniferum HOM05D006102 ORTHO05D007550 7.8e-244 847.8 890 54.4
THA.LOC104801481 Tarenaya hassleriana HOM05D006102 ORTHO05D007550 3.9e-243 845.5 886 54.9
AT4G00060 Arabidopsis thaliana HOM05D006102 ORTHO05D007550 6.6e-243 844.7 884 55.1
PSO170G5751 Papaver somniferum HOM05D006102 ORTHO05D007550 9.5e-242 840.9 890 53.8
Ah.05g173810 Amaranthus hybridus HOM05D006102 ORTHO05D007550 1.2e-241 840.5 685 64.1
Carub.0006s3716 Capsella rubella HOM05D006102 ORTHO05D007550 1.8e-240 836.6 884 54.5
Sp6g00130 Schrenkiella parvula HOM05D006102 ORTHO05D007550 5.2e-240 835.1 916 52.1
CARHR248110 Cardamine hirsuta HOM05D006102 ORTHO05D007550 6.8e-240 834.7 684 63.6
AUR62004162 Chenopodium quinoa HOM05D006102 ORTHO05D007550 2.0e-239 833.2 911 53.0
AUR62013660 Chenopodium quinoa HOM05D006102 ORTHO05D007550 2.7e-236 822.8 942 50.8
BolC3t15598H Brassica oleracea HOM05D006102 ORTHO05D007550 2.3e-235 819.7 906 52.9
BcaC01g04890 Brassica carinata HOM05D006102 ORTHO05D007550 3.0e-235 819.3 908 52.9
C03p32590 Brassica napus HOM05D006102 ORTHO05D007550 3.0e-235 819.3 908 52.9
BcaB01g02181 Brassica carinata HOM05D006102 ORTHO05D007550 1.5e-234 817.0 909 52.0
Aa31LG5G130 Aethionema arabicum HOM05D006102 ORTHO05D007550 2.5e-234 816.2 677 63.4
BraA03t11926Z Brassica rapa HOM05D006102 ORTHO05D007550 2.6e-231 806.2 903 52.3
A03p27130 Brassica napus HOM05D006102 ORTHO05D007550 5.8e-231 805.1 906 52.3
Oeu032185.2 Olea europaea HOM05D006102 ORTHO05D007550 1.9e-221 773.5 594 66.8
Lj7A537G47 Lonicera japonica HOM05D006102 ORTHO05D007550 2.8e-217 759.6 786 55.0
unitig_748.g7113 Utricularia gibba HOM05D006102 ORTHO05D007550 8.1e-217 758.1 764 55.2
MSTRG.28175 Avicennia marina HOM05D006102 ORTHO05D007550 2.2e-214 750.0 760 54.5
ATR0317G095 Amborella trichopoda HOM05D006102 ORTHO05D007550 1.2e-212 744.2 686 59.6
HPP92_005330 Vanilla planifolia HOM05D006102 ORTHO05D007550 1.8e-200 703.7 687 56.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.9e-186 657.1 910 45.7
Zm00001eb274180 Zea mays HOM05D006102 ORTHO05D007550 1.3e-174 617.8 916 43.3
Lsat_1_v5_gn_3_129280 Lactuca sativa HOM05D006102 ORTHO05D007550 1.9e-173 614.0 755 50.7
HanXRQChr03g0093281 Helianthus annuus HOM05D006102 ORTHO05D007550 1.6e-172 610.9 521 64.7
Hma1.2p1_0072F.1_g038380 Hydrangea macrophylla HOM05D006102 ORTHO05D007550 2.4e-120 437.6 304 72.0
Mapoly0072s0019 Marchantia polymorpha HOM05D006102 ORTHO05D007550 3.0e-110 404.1 738 41.6
Oeu005825.4 Olea europaea HOM05D006102 ORTHO05D007550 7.3e-101 372.9 532 44.2
Pp3c16_11310 Physcomitrium patens HOM05D006102 ORTHO05D007550 8.1e-84 316.2 772 35.6
vmacro22440 Vaccinium macrocarpon HOM05D006102 ORTHO05D007550 1.5e-82 312.0 299 56.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 1.0e-41 176.4 354 35.9
Cfa011153 Carpinus fangiana HOM05D006102 ORTHO05D007550 1.3e-41 176.0 181 60.2
Cfa011150 Carpinus fangiana HOM05D006102 ORTHO05D007550 1.8e-35 155.6 233 45.9
Cfa011156 Carpinus fangiana HOM05D006102 ORTHO05D007550 3.5e-34 151.4 144 61.8
Cfa011155 Carpinus fangiana HOM05D006102 ORTHO05D007550 6.8e-30 137.1 181 50.3
VMungo0540G0840 Vigna mungo HOM05D006102 ORTHO05D007550 4.4e-13 81.3 97 52.6
Actinidia27577 Actinidia chinensis HOM05D006102 ORTHO05D007550 1.1e-11 76.6 83 50.6
Os06g0669275 Oryza sativa ssp. japonica HOM05D006102 ORTHO05D007550 3.5e-10 71.6 94 46.8
BcaC01g06887 Brassica carinata HOM05D006102 ORTHO05D007550 1.7e-09 69.3 71 57.7
AagrBONN_evm.TU.Sc2ySwM_362.745 Anthoceros agrestis HOM05D004367 ORTHO05D004937 1.6e-07 62.8 124 31.5
Pp3c24_20390 Physcomitrium patens HOM05D004367 ORTHO05D004937 4.7e-07 61.2 147 34.0
Glyma.01G135400 Glycine max HOM05D006102 ORTHO05D007550 1.1e-06 60.1 55 61.8
Mapoly0006s0037 Marchantia polymorpha HOM05D004367 ORTHO05D004937 3.1e-06 58.5 134 33.6
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 6.8e-06 57.4 53 54.7


User provided reference genes

Program Settings