Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0311_0006 Quercus lobata HOM05D000274 ORTHO05D002552 7.7e-64 246.9 117 100.0
Duzib071G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 2.9e-18 95.5 220 32.7
Duzib233G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 2.9e-18 95.5 220 32.7
Duzib237G0004 Durio zibethinus HOM05D000274 ORTHO05D002552 2.9e-18 95.5 220 32.7
Duzib253G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 2.9e-18 95.5 220 32.7
Duzib086G0003 Durio zibethinus HOM05D000274 ORTHO05D002552 7.0e-17 90.9 247 29.6
Duzib124G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 7.0e-17 90.9 247 29.6
Duzib125G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 7.0e-17 90.9 247 29.6
Duzib162G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 7.0e-17 90.9 247 29.6
Duzib275G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 7.0e-17 90.9 247 29.6
Cfa021574 Carpinus fangiana HOM05D000274 ORTHO05D002552 6.0e-16 87.8 45 93.3
PSO548G0031 Papaver somniferum HOM05D000274 ORTHO05D002552 7.8e-16 87.4 45 91.1
BcaB02g11359 Brassica carinata HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BcaC03g15273 Brassica carinata HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BcaC07g42433 Brassica carinata HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BNapus_Darmor_BZH_scaffold_287p00220 Brassica napus HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
C02p28700 Brassica napus HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
C02p43600 Brassica napus HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
C06p22930 Brassica napus HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
C06p23060 Brassica napus HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BolSC29t60600H Brassica oleracea HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BolSC35t60659H Brassica oleracea HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BolSC46t61010H Brassica oleracea HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BraSC103t45477Z Brassica rapa HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
BraSC138t45563Z Brassica rapa HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
CARHR282180 Cardamine hirsuta HOM05D000274 ORTHO05D002552 1.0e-15 87.0 45 91.1
ATCG00670 Arabidopsis thaliana HOM05D000274 ORTHO05D002552 1.3e-15 86.7 45 88.9
PGR111G0023 Punica granatum HOM05D000274 ORTHO05D002552 1.7e-15 86.3 45 91.1
RcHm_v2.0_CPg0501991 Rosa chinensis HOM05D000274 ORTHO05D002552 1.7e-15 86.3 45 91.1
AL2G21640 Arabidopsis lyrata HOM05D000274 ORTHO05D002552 2.3e-15 85.9 45 88.9
Gohir.A05G285000 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.0e-15 85.5 45 88.9
Gohir.D01G102021 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.0e-15 85.5 45 88.9
Gohir.D06G018300 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.0e-15 85.5 45 88.9
Gorai.009G282800 Gossypium raimondii HOM05D000274 ORTHO05D002552 3.0e-15 85.5 45 88.9
Gorai.010G129800 Gossypium raimondii HOM05D000274 ORTHO05D002552 3.0e-15 85.5 45 88.9
C04p42950 Brassica napus HOM05D000274 ORTHO05D002552 3.9e-15 85.1 45 88.9
BolC4t25865H Brassica oleracea HOM05D000274 ORTHO05D002552 3.9e-15 85.1 45 88.9
Glyma.20G048700 Glycine max HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 86.7
Lsat_1_v5_gn_4_11460 Lactuca sativa HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 88.9
Lsat_1_v5_gn_9_50981 Lactuca sativa HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 88.9
Lalb_Chr04g0260931 Lupinus albus HOM05D000216 ORTHO05D002552 5.1e-15 84.7 45 88.9
Lalb_Chr07g0192041 Lupinus albus HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 88.9
Sed0002260 Sechium edule HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 86.7
Sed0002969 Sechium edule HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 86.7
Sed0019404 Sechium edule HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 86.7
Sed0022936 Sechium edule HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 86.7
Sc24g0000880 Simmondsia chinensis HOM05D000274 ORTHO05D002552 5.1e-15 84.7 45 88.9
EL10Ac5g13040 Beta vulgaris HOM05D000274 ORTHO05D002552 8.6e-15 84.0 45 86.7
EL10As12g24030 Beta vulgaris HOM05D000274 ORTHO05D002552 8.6e-15 84.0 45 86.7
Gohir.1Z050580 Gossypium hirsutum HOM05D000274 ORTHO05D002552 8.6e-15 84.0 45 86.7
RcHm_v2.0_Chr6g0260431 Rosa chinensis HOM05D000274 ORTHO05D002552 8.6e-15 84.0 45 88.9
Gohir.A12G229201 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr00c0314g0573521 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr01g0020281 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr04g0094301 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr10g0283621 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr10g0284311 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr10g0289321 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr10g0318131 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr11g0326901 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQChr11g0345211 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
HanXRQCPg0580111 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 83.6 45 86.7
MELO3C027089.2 Cucumis melo HOM05D000274 ORTHO05D002552 1.5e-14 83.2 45 84.4
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.5e-14 83.2 45 86.7
C09p40540 Brassica napus HOM05D000274 ORTHO05D002552 1.9e-14 82.8 45 86.7
ECA074G0006 Erigeron canadensis HOM05D000274 ORTHO05D002552 1.9e-14 82.8 45 84.4
LjContig00318g0024179 Lotus japonicus HOM05D000274 ORTHO05D002552 2.5e-14 82.4 45 86.7
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 2.5e-14 82.4 45 84.4
arahy.Tifrunner.gnm1.ann1.002YPW Arachis hypogaea HOM05D000274 ORTHO05D002552 3.3e-14 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.3I6E4U Arachis hypogaea HOM05D000274 ORTHO05D002552 3.3e-14 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.JE9GG4 Arachis hypogaea HOM05D000274 ORTHO05D002552 3.3e-14 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.KX9QRC Arachis hypogaea HOM05D000274 ORTHO05D002552 3.3e-14 82.0 45 84.4
DCAR_032510 Daucus carota HOM05D000274 ORTHO05D002552 3.3e-14 82.0 45 86.7
SalBow1G7090 Salvia bowleyana HOM05D000274 ORTHO05D002552 3.3e-14 82.0 45 84.4
Phvul.002G090301 Phaseolus vulgaris HOM05D000274 ORTHO05D002552 4.3e-14 81.6 45 84.4
ATR0303G006 Amborella trichopoda HOM05D000274 ORTHO05D002552 5.6e-14 81.3 45 86.7
HanXRQChr04g0095101 Helianthus annuus HOM05D000274 ORTHO05D002552 5.6e-14 81.3 45 84.4
Sc02g0004580 Simmondsia chinensis HOM05D000274 ORTHO05D002552 5.6e-14 81.3 45 82.2
COL.COLO4_02977 Corchorus olitorius HOM05D000274 ORTHO05D002552 7.3e-14 80.9 45 80.0
COL.COLO4_03028 Corchorus olitorius HOM05D000274 ORTHO05D002552 7.3e-14 80.9 45 80.0
COL.COLO4_03061 Corchorus olitorius HOM05D000274 ORTHO05D002552 7.3e-14 80.9 45 80.0
COL.COLO4_04073 Corchorus olitorius HOM05D000274 ORTHO05D002552 7.3e-14 80.9 45 80.0
Gohir.D07G185750 Gossypium hirsutum HOM05D000274 ORTHO05D002552 7.3e-14 80.9 45 84.4
arahy.Tifrunner.gnm1.ann1.8S8FMR Arachis hypogaea HOM05D000274 ORTHO05D002552 9.5e-14 80.5 45 82.2
CAN.G1739.8 Capsicum annuum HOM05D000274 ORTHO05D002552 9.5e-14 80.5 45 84.4
CAN.G219.29 Capsicum annuum HOM05D000274 ORTHO05D002552 9.5e-14 80.5 45 84.4
Gohir.D02G116125 Gossypium hirsutum HOM05D000274 ORTHO05D002552 9.5e-14 80.5 43 90.7
arahy.Tifrunner.gnm1.ann1.H8UXH3 Arachis hypogaea HOM05D000274 ORTHO05D002552 1.2e-13 80.1 45 82.2
BolC7t41719H Brassica oleracea HOM05D000274 ORTHO05D002552 1.2e-13 80.1 43 88.4
Eucgr.I00671 Eucalyptus grandis HOM05D000274 ORTHO05D002552 1.2e-13 80.1 45 82.2
Sc09g0009710 Simmondsia chinensis HOM05D000274 ORTHO05D002552 1.2e-13 80.1 45 84.4
MBI13_g29602_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 1.6e-13 79.7 45 82.2
SabraPtG0003900 Salix brachista HOM05D000274 ORTHO05D002552 1.6e-13 79.7 45 82.2
Gorai.010G140000 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.1e-13 79.3 45 82.2
MD11G1294400 Malus domestica HOM05D000274 ORTHO05D002552 2.1e-13 79.3 45 82.2
PGSC0003DMG402022617 Solanum tuberosum HOM05D000274 ORTHO05D002552 2.1e-13 79.3 45 80.0
Gohir.D06G104800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.8e-13 79.0 45 84.4
MBI16_g04458_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 2.8e-13 79.0 45 80.0
ATR1132G067 Amborella trichopoda HOM05D000274 ORTHO05D002552 3.6e-13 78.6 45 82.2
EL10As15g24108 Beta vulgaris HOM05D000274 ORTHO05D002552 3.6e-13 78.6 45 80.0
Nitab4.5_0010531g0050 Nicotiana tabacum HOM05D000274 ORTHO05D002552 3.6e-13 78.6 45 80.0
SalBow6G1627 Salvia bowleyana HOM05D000274 ORTHO05D002552 3.6e-13 78.6 45 80.0
EL10Ac1g01444 Beta vulgaris HOM05D000274 ORTHO05D002552 4.7e-13 78.2 44 81.8
Ciclev10003424m.g Citrus clementina HOM05D000274 ORTHO05D002552 8.1e-13 77.4 45 77.8
HanXRQChr02g0052561 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-12 77.0 46 82.6
Solyc00g500023.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 1.1e-12 77.0 45 75.6
Solyc00g500070.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 1.1e-12 77.0 45 75.6
Duzib225G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 1.8e-12 76.3 207 30.9
Duzib252G0003 Durio zibethinus HOM05D000274 ORTHO05D002552 1.8e-12 76.3 207 30.9
Nitab4.5_0005769g0060 Nicotiana tabacum HOM05D000274 ORTHO05D002552 1.8e-12 76.3 45 80.0
MBI06_g25326_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 2.3e-12 75.9 45 77.8
HanXRQChr06g0177591 Helianthus annuus HOM05D000274 ORTHO05D002552 3.1e-12 75.5 45 75.6
HanXRQChr00c0557g0575781 Helianthus annuus HOM05D000274 ORTHO05D002552 4.0e-12 75.1 45 77.8
CAN.G702.46 Capsicum annuum HOM05D000743 ORTHO05D000580 5.2e-12 74.7 45 77.8
Gohir.D06G113800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 5.2e-12 74.7 45 77.8
CAN.G648.4 Capsicum annuum HOM05D000274 ORTHO05D002552 6.8e-12 74.3 44 75.0
Gohir.A10G134850 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.8e-12 74.3 45 80.0
Lalb_Chr03g0038761 Lupinus albus HOM05D000274 ORTHO05D002552 6.8e-12 74.3 45 80.0
Lsat_1_v5_gn_2_43961 Lactuca sativa HOM05D000274 ORTHO05D002552 8.9e-12 73.9 45 75.6
Lsat_1_v5_gn_4_118880 Lactuca sativa HOM05D000274 ORTHO05D002552 1.2e-11 73.6 45 77.8
MBI18_g10796_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 1.5e-11 73.2 45 75.6
Gorai.002G264000 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.0e-11 72.8 45 75.6
Gohir.D09G093050 Gossypium hirsutum HOM05D000274 ORTHO05D002552 4.4e-11 71.6 51 72.5
Medtr0002s0730 Medicago truncatula HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb039170 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb255900 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb434890 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb435080 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb435150 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb435370 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb437160 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb439970 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
Zm00001eb440350 Zea mays HOM05D000274 ORTHO05D002552 1.3e-10 70.1 43 76.7
SMO086G0017 Selaginella moellendorffii HOM05D000274 ORTHO05D002552 2.9e-10 68.9 45 66.7
BcaC02g09867 Brassica carinata HOM05D000274 ORTHO05D002552 3.7e-10 68.6 37 86.5
C04p35750 Brassica napus HOM05D000274 ORTHO05D002552 3.7e-10 68.6 37 86.5
BolC4t25226H Brassica oleracea HOM05D000274 ORTHO05D002552 3.7e-10 68.6 37 86.5
Hund10283 Selenicereus undatus HOM05D000274 ORTHO05D002552 4.9e-10 68.2 45 62.2
Hund27992 Selenicereus undatus HOM05D000274 ORTHO05D002552 4.9e-10 68.2 45 62.2
Gohir.D01G217650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.4e-10 67.8 45 71.1
Duzib026G0001 Durio zibethinus HOM05D000274 ORTHO05D002552 1.4e-09 66.6 46 65.2
Duzib185G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 1.4e-09 66.6 46 65.2
Gorai.002G210500 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.4e-09 65.9 45 71.1
arahy.Tifrunner.gnm1.ann1.M2WIVZ Arachis hypogaea HOM05D000274 ORTHO05D002552 4.1e-09 65.1 45 71.1
Medtr4g034690 Medicago truncatula HOM05D000274 ORTHO05D002552 5.4e-09 64.7 45 62.2
Medtr4g077730 Medicago truncatula HOM05D000274 ORTHO05D002552 5.4e-09 64.7 45 62.2
Hund27967 Selenicereus undatus HOM05D000274 ORTHO05D002552 5.4e-09 64.7 44 59.1
Gohir.D01G169088 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.2e-08 63.5 45 68.9
Hund12884 Selenicereus undatus HOM05D000274 ORTHO05D002552 2.1e-08 62.8 37 67.6
EL10Ac1g01196 Beta vulgaris HOM05D000274 ORTHO05D002552 6.0e-08 61.2 45 73.3
BolSC29t60479H Brassica oleracea HOM05D000274 ORTHO05D002552 7.8e-08 60.8 39 71.8
Lsat_1_v5_gn_5_50301 Lactuca sativa HOM05D000274 ORTHO05D002552 1.7e-07 59.7 36 77.8
Psat0s1446g0160 Pisum sativum HOM05D000274 ORTHO05D002552 1.7e-07 59.7 45 53.3
Psat0s7142g0080 Pisum sativum HOM05D000274 ORTHO05D002552 1.7e-07 59.7 45 53.3
MBI14_g44884_MAGBIO Magnolia biondii HOM05D000537 ORTHO05D000415 5.1e-07 58.2 33 78.8
BNapus_Darmor_BZH_scaffold_253p00250 Brassica napus HOM05D008747 ORTHO05D010943 2.5e-06 55.8 35 77.1
HPP92_028400 Vanilla planifolia HOM05D000274 ORTHO05D002552 2.5e-06 55.8 45 53.3
HPP92_028425 Vanilla planifolia HOM05D000274 ORTHO05D002552 2.5e-06 55.8 45 53.3


User provided reference genes

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