Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 5.8e-89 330.9 167 100.0
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.2e-43 179.5 160 62.5
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 1.9e-31 139.8 165 50.3
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 2.1e-30 136.3 165 48.5
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 4.7e-30 135.2 165 49.7
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.7e-30 135.2 165 47.9
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 3.0e-29 132.5 165 49.7
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.9e-29 132.1 165 48.5
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.7e-29 131.3 165 47.9
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.5e-28 130.2 165 47.3
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 8.2e-27 124.4 161 44.7
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 3.1e-26 122.5 162 45.1
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 3.8e-24 115.5 161 47.8
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.1e-23 114.0 165 44.2
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 3.2e-23 112.5 162 42.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 3.2e-23 112.5 162 42.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 5.5e-23 111.7 162 42.0
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.0e-21 107.5 149 43.0
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.5e-20 103.6 143 45.5
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 2.0e-20 103.2 167 41.9
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 7.4e-20 101.3 121 46.3
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 4.8e-19 98.6 160 40.6
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.1e-18 97.4 160 41.9
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.1e-18 97.4 164 41.5
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 5.3e-18 95.1 161 36.6
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 5.9e-17 91.7 163 39.3
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 2.2e-16 89.7 163 41.7
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 8.5e-16 87.8 167 41.9
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.5e-15 87.0 167 38.3
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 4.2e-15 85.5 138 41.3
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 5.5e-15 85.1 140 41.4
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.2e-14 84.0 132 43.2
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.2e-14 84.0 132 43.2
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 8.8e-13 77.8 152 35.5
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 2.0e-12 76.6 62 56.5
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 2.6e-12 76.3 167 34.1
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 3.3e-12 75.9 146 36.3
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 9.7e-12 74.3 165 31.5
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.7e-11 73.6 132 34.8
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.7e-11 73.6 53 60.4
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 2.2e-11 73.2 56 55.4
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 2.2e-11 73.2 172 34.9
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.7e-11 72.4 170 32.4
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 3.7e-11 72.4 165 36.4
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.1e-10 70.9 95 41.1
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 4.1e-10 68.9 170 32.4
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 5.3e-10 68.6 156 33.3
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 9.1e-10 67.8 165 34.5
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 9.1e-10 67.8 59 50.8
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.2e-09 67.4 76 51.3
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 3.5e-09 65.9 61 54.1
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.5e-09 65.5 110 40.0
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 5.9e-09 65.1 139 36.0
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 5.9e-09 65.1 47 59.6
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 7.7e-09 64.7 53 50.9
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.7e-08 63.5 61 52.5
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.7e-08 63.5 61 50.8
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.7e-08 63.5 132 36.4
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.7e-08 63.5 37 78.4
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 2.2e-08 63.2 61 50.8
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.2e-08 63.2 61 50.8
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.2e-08 63.2 61 50.8
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.2e-08 63.2 61 50.8
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 2.9e-08 62.8 61 52.5
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 3.8e-08 62.4 61 50.8
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 3.8e-08 62.4 165 33.3
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 3.8e-08 62.4 46 54.3
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 5.0e-08 62.0 165 32.1
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 6.5e-08 61.6 128 36.7
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.1e-07 60.8 132 36.4
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.9e-07 60.1 124 36.3
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.2e-07 59.3 45 57.8
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 7.2e-07 58.2 99 38.4
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 9.4e-07 57.8 54 50.0
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 9.4e-07 57.8 169 32.5
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.2e-06 57.4 45 57.8
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.6e-06 55.8 55 45.5
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.6e-06 55.8 164 32.3
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 8.0e-06 54.7 40 62.5
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 8.0e-06 54.7 167 31.1
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 8.0e-06 54.7 33 69.7
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 8.0e-06 54.7 55 54.5


User provided reference genes

Program Settings