Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-167 592.8 318 100.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-167 592.8 318 100.0
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 3.3e-133 478.8 319 84.3
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.8e-132 475.7 317 84.2
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 4.7e-116 421.8 319 71.8
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.5e-114 416.8 319 72.1
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.9e-110 402.1 320 68.4
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 8.7e-110 401.0 317 70.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.3e-109 399.1 317 69.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 3.6e-108 395.6 320 68.1
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 4.7e-108 395.2 319 67.4
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 4.7e-108 395.2 317 69.7
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-107 394.0 319 68.3
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 9.0e-107 391.0 311 68.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.2e-106 390.6 319 66.8
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-106 390.2 319 68.0
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.5e-106 390.2 319 66.8
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 4.4e-106 388.7 311 69.1
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.9e-105 386.0 316 68.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.1e-104 384.0 318 66.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.9e-104 383.3 319 70.2
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 7.1e-104 381.3 318 66.4
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.6e-103 380.2 319 65.8
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.8e-103 377.9 315 65.7
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.0e-102 377.5 296 71.3
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 3.9e-102 375.6 318 66.4
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 5.1e-102 375.2 322 64.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.6e-102 374.8 320 65.3
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 8.7e-102 374.4 319 64.9
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 7.3e-101 371.3 321 64.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.6e-100 370.2 358 60.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.8e-100 368.6 316 64.2
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-99 367.5 319 64.6
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.1e-99 367.5 322 63.4
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 5.3e-99 365.2 322 64.0
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.3e-99 365.2 277 69.7
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 5.3e-99 365.2 317 64.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 9.0e-99 364.4 320 64.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.6e-98 362.8 314 64.3
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 5.8e-98 361.7 318 62.9
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.9e-97 358.6 318 65.1
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 8.4e-97 357.8 318 62.6
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 8.4e-97 357.8 316 65.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 2.4e-96 356.3 306 66.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 7.1e-96 354.8 317 62.5
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.5e-95 352.4 321 61.1
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 3.5e-95 352.4 366 57.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.9e-95 351.3 317 61.5
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 7.9e-95 351.3 320 61.9
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.7e-94 348.2 316 62.0
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-93 347.4 317 60.9
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.5e-93 347.1 320 61.6
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.5e-93 347.1 318 61.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.5e-93 347.1 318 62.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.5e-93 346.3 316 60.8
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.6e-93 345.1 318 62.3
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 4.8e-92 342.0 322 59.3
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 4.8e-92 342.0 306 61.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 6.2e-92 341.7 319 61.1
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 8.1e-92 341.3 320 59.7
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 8.1e-92 341.3 318 61.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.1e-91 340.9 318 61.0
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.1e-91 340.9 322 59.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.8e-91 340.1 320 62.2
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.4e-91 339.7 317 61.8
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 7.6e-90 334.7 304 62.8
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.4e-88 329.7 302 62.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.5e-88 328.6 274 65.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.5e-88 328.6 317 59.6
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.7e-87 326.2 319 60.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.5e-87 325.9 315 59.0
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 3.5e-87 325.9 322 59.3
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.7e-86 321.6 294 61.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.7e-86 321.2 314 59.2
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.5e-85 320.5 317 59.0
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.3e-85 319.3 316 57.0
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.6e-84 317.0 321 57.3
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 3.7e-84 315.8 313 59.1
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.2e-84 315.1 316 57.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 8.2e-84 314.7 318 59.4
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 8.2e-84 314.7 259 71.8
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 2.4e-83 313.2 259 69.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-82 310.8 318 58.5
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.6e-82 309.7 316 57.3
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 3.4e-82 309.3 302 59.6
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.5e-82 308.9 322 57.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.0e-81 307.8 287 60.3
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.8e-81 305.8 311 56.9
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.8e-81 305.8 319 57.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.8e-81 305.8 318 56.3
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.1e-80 301.6 322 56.2
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.2e-79 300.8 322 55.0
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.0e-78 296.2 277 60.6
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.7e-78 295.0 291 57.7
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.5e-77 293.9 319 54.2
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.5e-77 293.1 314 55.4
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.4e-77 291.6 277 63.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.3e-76 290.8 309 54.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.1e-75 287.7 303 56.8
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 4.1e-75 285.8 265 59.2
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-74 284.3 309 55.0
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.2e-73 280.0 321 52.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 5.0e-73 278.9 322 50.0
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.9e-72 276.9 294 55.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-72 276.9 322 50.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.2e-71 274.2 322 52.8
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 5.1e-70 268.9 280 57.1
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 8.8e-70 268.1 302 55.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.1e-69 267.7 323 51.7
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.0e-69 266.9 321 50.8
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.3e-69 266.2 301 53.5
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 3.3e-69 266.2 349 49.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 5.7e-69 265.4 314 53.8
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 7.4e-69 265.0 323 51.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 4.8e-68 262.3 295 52.5
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.4e-67 260.0 319 52.0
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 5.3e-67 258.8 302 53.3
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.6e-66 256.5 306 52.0
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 9.4e-64 248.1 309 48.9
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 7.9e-63 245.0 306 48.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.4e-62 244.2 306 50.0
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.8e-62 243.8 264 55.7
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 4.4e-61 239.2 284 51.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.4e-61 238.4 312 48.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.5e-58 230.7 223 62.8
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 5.0e-57 225.7 186 69.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 8.5e-57 224.9 301 48.8
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.9e-56 223.8 281 51.2
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 3.2e-56 223.0 274 51.5
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 6.1e-55 218.8 318 48.1
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.8e-54 217.2 223 61.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 4.1e-51 206.1 279 50.2
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 9.1e-51 204.9 281 48.8
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.0e-50 203.8 274 48.9
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 4.5e-50 202.6 344 39.2
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 3.8e-49 199.5 274 46.7
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.0e-46 191.4 313 44.7
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-44 184.1 227 52.0
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.3e-38 163.7 205 54.1
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.8e-35 154.1 336 36.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 3.1e-35 153.3 153 54.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 5.4e-35 152.5 201 47.8
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 5.4e-35 152.5 134 58.2
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-31 141.4 342 34.5
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 7.5e-29 132.1 256 37.1
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.3e-28 129.0 301 33.6
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 3.5e-26 123.2 161 46.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.7e-25 120.9 299 33.1
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.2e-23 114.8 76 80.3
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.0e-22 111.7 129 49.6
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 2.6e-21 107.1 125 48.8
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 5.8e-21 105.9 92 66.3
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 7.5e-13 79.0 95 49.5
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 3.0e-09 67.0 34 91.2
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 7.3e-08 62.4 77 41.6
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 7.3e-08 62.4 76 42.1
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 1.6e-07 61.2 72 51.4
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 5.2e-06 56.2 38 57.9
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 6.8e-06 55.8 119 34.5


User provided reference genes

Program Settings