Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 0.0e+00 1553.9 869 100.0
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 0.0e+00 1544.3 871 99.5
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 0.0e+00 1185.2 896 75.0
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 0.0e+00 1125.2 889 72.3
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 0.0e+00 1090.1 876 70.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 0.0e+00 1080.1 902 67.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.1e-307 1057.4 879 68.6
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.4e-306 1056.2 868 69.7
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.1e-299 1032.3 763 76.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 2.1e-299 1032.3 868 68.7
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 7.0e-295 1017.3 811 70.2
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-292 1010.0 845 69.6
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 6.1e-291 1004.2 874 67.3
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.0e-290 1001.5 879 65.3
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.4e-287 993.0 877 65.1
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 8.5e-285 983.8 890 63.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.5e-284 981.1 891 65.5
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.2e-283 979.9 874 63.2
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 6.1e-283 977.6 762 71.7
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.2e-281 973.4 894 63.0
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.6e-281 972.2 874 63.7
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.7e-280 969.5 894 64.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 8.3e-280 967.2 894 65.3
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.9e-278 961.1 843 66.3
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.3e-277 959.9 924 59.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.9e-277 958.7 841 65.6
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.5e-276 956.4 843 66.4
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.3e-272 943.3 885 62.4
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.1e-271 938.7 841 64.1
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 7.0e-271 937.6 841 63.6
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.7e-270 935.6 874 61.8
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 3.5e-270 935.3 877 62.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.3e-269 932.6 843 65.5
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-268 930.2 811 66.7
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 3.6e-267 925.2 839 62.8
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.3e-266 922.5 891 60.2
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 4.0e-266 921.8 885 59.4
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.2e-266 921.4 898 59.4
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.9e-264 915.6 882 58.7
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.4e-263 912.5 887 60.1
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.2e-263 912.1 881 61.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.7e-261 906.4 882 58.6
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.9e-261 905.2 853 61.0
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 6.6e-261 904.4 870 61.7
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 4.3e-260 901.7 887 59.5
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 9.5e-260 900.6 790 65.7
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 3.6e-259 898.7 886 62.3
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.6e-259 898.7 896 60.4
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 8.0e-259 897.5 878 61.7
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.1e-258 897.1 954 56.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.1e-258 895.6 777 67.3
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 7.5e-257 891.0 878 58.7
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.3e-256 890.2 850 61.3
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 2.7e-254 882.5 869 57.4
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 3.5e-254 882.1 894 60.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.9e-253 878.6 855 59.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.2e-251 871.3 896 59.5
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.4e-249 865.5 897 59.8
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 4.4e-249 865.1 894 58.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.4e-249 865.1 896 59.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.6e-246 856.7 875 58.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.1e-246 856.3 872 59.9
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.8e-242 843.2 914 56.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.2e-241 840.5 850 57.6
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.4e-239 831.6 894 57.5
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.3e-236 821.2 894 58.4
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.8e-235 819.3 894 58.3
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.2e-233 813.9 893 55.4
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.8e-232 808.9 844 57.9
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.4e-232 807.7 894 57.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 3.9e-229 798.9 881 56.2
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.1e-227 793.1 874 55.9
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 8.1e-227 791.2 878 53.6
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.1e-226 790.8 876 55.6
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 2.9e-224 782.7 908 52.3
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.9e-223 780.0 930 54.2
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.7e-221 771.2 854 54.7
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.5e-220 770.4 873 55.3
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.5e-220 770.4 825 55.0
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 6.2e-219 765.0 681 64.8
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.8e-218 763.5 871 56.9
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.4e-218 763.1 852 55.5
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-214 749.6 889 55.1
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 3.3e-212 742.7 850 55.6
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.6e-212 741.1 889 53.3
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.3e-211 740.7 866 50.9
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.4e-210 736.5 672 63.4
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 5.0e-208 728.8 872 54.5
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.1e-207 727.6 865 51.7
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.1e-207 727.6 818 56.5
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 4.6e-206 722.2 864 52.3
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 3.3e-204 716.1 778 56.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-199 701.0 893 52.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.6e-198 696.0 883 52.1
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.0e-197 694.5 852 51.2
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.7e-195 686.0 826 52.2
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.0e-193 680.2 782 54.0
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.7e-192 677.2 860 50.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.2e-190 671.0 709 56.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 5.3e-186 655.6 699 56.9
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.9e-184 649.8 828 51.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 6.5e-184 648.7 836 50.8
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 3.0e-181 639.8 862 50.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 5.3e-178 629.0 867 47.8
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 3.5e-177 626.3 741 51.6
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.0e-176 624.8 622 58.0
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 2.2e-176 623.6 773 53.0
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 4.0e-173 612.8 838 49.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 4.2e-167 592.8 767 49.5
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 4.7e-166 589.3 767 49.8
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 6.1e-166 589.0 914 45.1
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.4e-164 583.2 835 47.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.0e-156 557.4 763 50.9
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 3.2e-154 550.1 765 49.4
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 9.2e-154 548.5 761 49.7
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.2e-153 548.1 760 51.3
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.0e-152 545.0 865 43.9
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 8.6e-152 542.0 761 50.6
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-150 538.1 836 43.7
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.0e-148 530.8 894 43.6
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 2.3e-144 517.3 774 48.7
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 5.0e-144 516.2 762 48.6
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 4.0e-141 506.5 502 59.8
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.5e-140 504.6 856 43.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.4e-138 497.3 847 41.7
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-133 481.5 317 84.2
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-133 481.5 317 84.2
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 3.4e-132 476.9 729 48.0
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.1e-130 471.9 815 40.7
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.4e-130 471.5 731 48.2
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 7.1e-130 469.2 755 46.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.7e-128 464.5 765 47.2
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 5.6e-127 459.5 726 46.6
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.6e-124 450.7 729 46.6
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.2e-121 441.8 734 46.5
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 7.6e-116 422.5 722 45.4
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.4e-106 391.0 413 57.1
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.5e-103 380.9 375 60.5
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 5.5e-90 336.7 287 66.2
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.8e-85 321.6 975 33.6
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.4e-85 321.2 665 39.1
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.7e-75 288.5 420 45.2
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 8.5e-75 286.2 725 36.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.6e-71 274.6 894 33.4
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 8.2e-70 269.6 766 35.1
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.2e-62 245.0 842 29.8
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.4e-61 241.5 779 30.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.6e-57 228.8 361 44.3
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-44 186.0 144 71.5
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-39 169.5 256 42.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 9.8e-39 166.4 137 67.2
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.3e-38 166.0 137 67.2
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.5e-34 152.5 163 51.5
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 4.9e-30 137.5 119 65.5
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.6e-26 124.0 130 59.2
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.7e-25 120.9 117 54.7
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 2.3e-24 118.6 167 46.1
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-24 117.9 189 40.7
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 6.0e-20 104.0 210 36.7
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 7.8e-20 103.6 107 56.1
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 7.8e-20 103.6 164 40.9
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.7e-19 102.4 97 62.9
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.0e-16 91.3 77 63.6
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.0e-15 89.0 200 37.5
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 2.0e-15 89.0 121 43.8
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 2.0e-15 89.0 128 43.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 3.4e-15 88.2 451 27.9
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 3.4e-15 88.2 413 29.5
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 9.9e-15 86.7 87 56.3
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 9.9e-15 86.7 87 56.3
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 7.1e-13 80.5 187 36.9
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.6e-12 79.3 197 34.5
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 3.0e-11 75.1 105 43.8
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 6.6e-11 73.9 63 63.5
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 5.6e-10 70.9 169 36.7
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 6.2e-09 67.4 34 91.2
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 8.1e-09 67.0 97 44.3
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.0e-08 64.7 77 42.9
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 4.0e-08 64.7 76 43.4
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 2.6e-07 62.0 72 51.4
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 2.9e-06 58.5 152 35.5


User provided reference genes

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