Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 1.5e-65 252.7 128 100.0
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.7e-64 249.2 128 99.2
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 9.3e-47 190.3 124 73.4
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.1e-38 162.5 124 64.5
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.7e-38 162.2 124 62.1
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 3.6e-38 161.8 124 66.9
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 4.6e-38 161.4 124 62.9
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 4.6e-38 161.4 124 63.7
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 6.1e-38 161.0 124 62.1
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.4e-37 159.8 124 63.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 1.4e-37 159.8 124 61.3
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 1.8e-37 159.5 124 64.5
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.8e-37 159.5 124 63.7
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.8e-37 159.5 124 63.7
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.8e-37 159.5 124 63.7
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 2.3e-37 159.1 124 63.7
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 2.3e-37 159.1 124 63.7
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 5.1e-37 157.9 124 62.1
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.1e-36 156.8 124 62.9
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.1e-36 156.8 125 64.0
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.1e-36 156.8 125 63.2
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 2.5e-36 155.6 124 60.5
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.3e-35 153.3 124 63.7
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 1.7e-35 152.9 124 58.9
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.7e-35 152.9 124 58.9
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.2e-35 152.5 124 62.9
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 2.8e-35 152.1 125 60.8
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 8.2e-35 150.6 124 61.3
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 8.2e-35 150.6 124 60.5
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.1e-34 150.2 124 60.5
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 1.1e-34 150.2 125 61.6
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.4e-34 149.8 124 55.6
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.4e-34 149.8 124 61.3
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.8e-34 149.4 123 61.0
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 2.4e-34 149.1 109 61.5
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.4e-34 149.1 124 60.5
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.4e-34 149.1 123 60.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 2.4e-34 149.1 124 61.3
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 3.1e-34 148.7 124 58.1
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 6.9e-34 147.5 123 57.7
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 6.9e-34 147.5 124 60.5
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.2e-33 146.7 124 58.9
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 4.5e-33 144.8 124 60.5
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 5.9e-33 144.4 124 58.1
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 7.7e-33 144.1 124 57.3
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.0e-32 143.7 124 57.3
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.0e-32 143.7 125 59.2
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.3e-32 143.3 124 54.8
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.3e-32 143.3 124 58.1
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.7e-32 142.9 123 59.3
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 2.9e-32 142.1 125 57.6
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 3.8e-32 141.7 124 55.6
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.8e-32 141.7 124 56.5
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 5.0e-32 141.4 124 59.7
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 5.0e-32 141.4 125 59.2
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 6.5e-32 141.0 125 56.8
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 8.5e-32 140.6 124 58.9
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 8.5e-32 140.6 124 55.6
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.1e-31 140.2 132 54.5
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.4e-31 139.8 124 55.6
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 1.9e-31 139.4 125 60.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 2.5e-31 139.0 124 54.8
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 3.2e-31 138.7 101 63.4
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 3.2e-31 138.7 124 58.1
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 5.5e-31 137.9 125 56.8
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.2e-30 136.7 124 53.2
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 2.1e-30 136.0 122 57.4
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 2.1e-30 136.0 124 54.0
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 2.7e-30 135.6 127 53.5
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 4.7e-30 134.8 132 50.8
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.7e-30 134.8 127 53.5
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 6.1e-30 134.4 123 54.5
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 7.9e-30 134.0 127 52.8
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 7.9e-30 134.0 127 52.8
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 7.9e-30 134.0 123 54.5
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 1.4e-29 133.3 124 57.3
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.4e-29 133.3 127 52.8
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.8e-29 132.9 106 60.4
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 1.8e-29 132.9 142 49.3
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 3.9e-29 131.7 124 56.5
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 5.1e-29 131.3 124 55.6
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 6.7e-29 131.0 105 61.0
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 6.7e-29 131.0 124 55.6
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 6.7e-29 131.0 124 55.6
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 6.7e-29 131.0 124 55.6
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 6.7e-29 131.0 124 55.6
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 4.4e-28 128.3 125 49.6
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 4.4e-28 128.3 123 50.4
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 5.7e-28 127.9 135 50.4
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 2.2e-27 125.9 124 55.6
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 3.7e-27 125.2 124 48.4
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 6.3e-27 124.4 124 53.2
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 6.3e-27 124.4 117 50.4
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 6.3e-27 124.4 130 53.8
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 8.2e-27 124.0 97 62.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 4.1e-26 121.7 125 53.6
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.1e-26 121.7 144 44.4
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 7.0e-26 120.9 144 44.4
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 2.0e-25 119.4 104 48.1
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 8.5e-24 114.0 108 49.1
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-22 109.8 83 60.2
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.6e-22 109.8 89 60.7
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 6.7e-21 104.4 84 61.9
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-20 102.8 91 56.0
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-16 90.1 108 39.8
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 2.9e-16 89.0 104 41.3
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.8e-16 88.6 150 39.3
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.1e-15 87.0 122 45.1
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 7.2e-15 84.3 145 35.9
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-14 82.8 71 52.1
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 2.7e-14 82.4 107 41.1
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-14 82.0 71 53.5
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 4.7e-14 81.6 64 62.5
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 8.0e-14 80.9 110 40.9
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 6.8e-13 77.8 69 55.1
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 8.8e-13 77.4 95 40.0
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 8.8e-13 77.4 95 40.0
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.5e-12 76.6 105 38.1
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-12 76.3 71 49.3
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 3.4e-12 75.5 58 65.5
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 7.5e-12 74.3 106 43.4
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.1e-10 70.5 64 50.0
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 4.1e-10 68.6 58 60.3
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.0e-09 66.2 60 55.0
SGA_v2.0_scaffold74G24592 Striga asiatica HOM05D000172 ORTHO05D008216 3.2e-07 58.9 66 50.0


User provided reference genes

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