Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 1.2e-100 369.8 177 100.0
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.2e-89 333.2 172 94.2
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-79 299.7 148 98.0
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-79 299.7 148 98.0
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 1.3e-78 296.6 161 88.8
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 7.0e-77 290.8 172 82.6
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 1.0e-75 287.0 172 80.8
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 3.6e-73 278.5 176 77.3
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 1.8e-72 276.2 172 77.3
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 1.8e-72 276.2 172 77.3
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 8.9e-72 273.9 172 75.6
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 1.2e-71 273.5 172 76.2
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 1.7e-70 269.6 161 79.5
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 6.4e-70 267.7 172 75.6
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 1.4e-69 266.5 172 73.8
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 1.4e-69 266.5 172 73.8
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 1.4e-69 266.5 172 73.8
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 2.7e-68 262.3 175 72.6
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 3.5e-68 261.9 172 71.5
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 4.6e-68 261.5 161 76.4
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 5.0e-67 258.1 172 71.5
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 6.6e-67 257.7 172 71.5
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 6.6e-67 257.7 160 74.4
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 6.6e-67 257.7 164 75.0
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 8.6e-67 257.3 172 73.8
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 1.1e-66 256.9 172 71.5
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 1.9e-66 256.1 172 72.7
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 1.9e-66 256.1 172 69.8
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 2.5e-66 255.8 172 72.7
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 4.3e-66 255.0 164 74.4
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 9.5e-66 253.8 172 72.1
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 9.5e-66 253.8 172 72.7
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 9.5e-66 253.8 172 72.1
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 9.5e-66 253.8 172 72.1
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 1.2e-65 253.4 161 76.4
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.2e-65 253.4 172 71.5
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 1.6e-65 253.1 172 72.1
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.6e-65 253.1 175 68.6
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 1.6e-65 253.1 172 71.5
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 1.6e-65 253.1 174 71.3
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 2.8e-65 252.3 163 72.4
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 3.6e-65 251.9 172 72.1
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 3.6e-65 251.9 172 72.1
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 3.6e-65 251.9 172 72.7
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 3.6e-65 251.9 172 69.8
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 3.6e-65 251.9 161 73.3
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 6.2e-65 251.1 178 70.8
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 1.4e-64 250.0 172 72.1
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 1.8e-64 249.6 172 72.1
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 2.3e-64 249.2 172 67.4
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 2.3e-64 249.2 172 67.4
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 2.3e-64 249.2 172 67.4
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.1e-64 248.8 164 71.3
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 4.0e-64 248.4 172 66.9
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 8.9e-64 247.3 175 66.3
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 1.5e-63 246.5 161 70.8
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 2.0e-63 246.1 172 69.8
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 4.4e-63 245.0 162 71.0
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 7.5e-63 244.2 172 69.2
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 9.8e-63 243.8 172 69.2
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 1.7e-62 243.0 172 66.9
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 2.9e-62 242.3 175 66.9
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 2.9e-62 242.3 175 66.9
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 2.9e-62 242.3 172 65.1
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 3.7e-62 241.9 174 65.5
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 6.4e-62 241.1 172 65.1
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 8.3e-62 240.7 160 70.6
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 1.4e-61 240.0 171 67.3
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 1.9e-61 239.6 172 64.5
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 2.4e-61 239.2 175 68.0
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 7.1e-61 237.7 172 64.5
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 9.2e-61 237.3 172 65.1
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 1.2e-60 236.9 174 64.4
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.7e-60 235.7 172 64.0
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 3.5e-60 235.3 172 63.4
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 5.1e-59 231.5 175 63.4
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 1.5e-58 229.9 161 70.2
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 1.9e-58 229.6 164 66.5
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 3.3e-58 228.8 160 65.6
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 1.2e-57 226.9 162 68.5
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 1.6e-57 226.5 174 62.6
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 6.2e-57 224.6 160 65.0
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 1.8e-56 223.0 172 61.6
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 1.2e-55 220.3 175 61.1
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 1.5e-55 219.9 175 60.6
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 1.7e-54 216.5 172 61.0
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 1.4e-53 213.4 175 60.0
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 9.2e-53 210.7 172 58.1
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 5.1e-51 204.9 172 58.7
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 1.6e-44 183.3 180 54.4
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 8.1e-41 171.0 174 46.6
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 1.8e-40 169.9 159 50.3
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 6.0e-36 154.8 170 43.5
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 5.1e-35 151.8 167 46.1
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 2.8e-33 146.0 186 43.0
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.7e-30 136.7 98 65.3
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.2e-30 136.3 98 65.3
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 1.2e-28 130.6 105 57.1
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 3.9e-27 125.6 100 62.0
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 3.9e-27 125.6 159 40.3
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 1.3e-22 110.5 161 41.6
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.8e-22 109.0 63 76.2
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 7.1e-21 104.8 165 37.6
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 1.8e-19 100.1 62 67.7
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 1.6e-17 93.6 100 46.0
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.6e-15 86.3 159 32.7
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 7.2e-13 78.2 72 51.4
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 2.1e-12 76.6 39 94.9
Lsat_1_v5_gn_7_52100 Lactuca sativa HOM05D000329 ORTHO05D005330 5.1e-11 72.0 71 49.3
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.1e-11 72.0 54 64.8


User provided reference genes

Program Settings