Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 4.3e-229 797.7 426 100.0
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.2e-217 758.8 430 96.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 7.4e-181 637.5 451 81.6
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 7.5e-109 398.3 473 48.8
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 9.8e-109 397.9 487 49.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.9e-108 396.4 496 47.6
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.7e-108 396.0 488 49.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.4e-108 395.2 470 52.8
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.4e-107 394.0 472 48.7
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.2e-107 392.9 472 48.5
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 4.1e-107 392.5 481 49.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.2e-106 391.0 463 49.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 6.0e-106 388.7 467 48.0
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.3e-105 386.7 483 49.3
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.1e-104 384.4 501 45.7
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.9e-104 383.6 488 46.7
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.3e-104 382.9 470 48.1
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 7.3e-104 381.7 478 47.7
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 9.5e-104 381.3 477 46.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.1e-103 380.2 487 47.8
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.1e-103 380.2 454 50.9
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.6e-103 379.4 483 48.4
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 6.8e-102 375.2 481 46.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.2e-101 374.4 486 47.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 7.5e-101 371.7 485 45.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 9.8e-101 371.3 533 43.2
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.3e-100 370.9 526 44.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.9e-100 369.0 463 48.6
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.4e-100 368.6 445 50.6
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.1e-99 367.9 472 46.8
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.4e-99 367.5 468 44.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.4e-99 367.5 490 45.5
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.4e-99 366.7 477 48.2
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.4e-99 366.7 502 45.8
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.4e-99 366.7 472 47.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 3.2e-99 366.3 504 46.2
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 3.2e-99 366.3 437 51.5
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.1e-99 365.9 445 50.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.0e-99 365.2 445 50.3
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 7.0e-99 365.2 447 45.6
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 9.2e-99 364.8 445 50.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.2e-98 364.4 452 47.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-98 364.4 468 45.7
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.6e-98 364.0 445 54.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.6e-98 364.0 486 46.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.5e-98 362.8 469 47.3
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 4.6e-98 362.5 474 46.6
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 7.8e-98 361.7 486 47.1
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 7.8e-98 361.7 491 45.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.3e-97 360.9 517 43.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.7e-97 360.5 452 47.6
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.7e-97 360.5 452 47.6
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.0e-97 359.8 461 48.4
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.9e-97 359.4 469 46.7
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.9e-97 359.4 473 45.7
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.9e-97 359.4 459 46.4
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 5.1e-97 359.0 449 49.7
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.1e-97 359.0 472 47.2
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 6.6e-97 358.6 449 47.4
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 8.6e-97 358.2 491 45.0
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.5e-96 357.5 492 44.1
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.5e-96 356.7 432 47.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.3e-96 355.1 464 47.2
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 9.5e-96 354.8 467 45.4
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 9.5e-96 354.8 455 47.3
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.5e-96 354.8 489 44.6
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.2e-95 352.1 489 44.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.2e-95 352.1 471 42.5
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 8.1e-95 351.7 463 43.2
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.4e-94 350.9 476 43.9
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.1e-94 349.7 514 44.6
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.1e-94 349.7 510 43.5
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 8.9e-94 348.2 454 48.2
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.2e-93 347.8 474 45.4
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 2.0e-93 347.1 508 41.9
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 4.4e-93 345.9 516 41.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 9.9e-93 344.7 466 44.4
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.3e-92 344.4 462 45.2
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.7e-92 344.0 473 43.3
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.2e-92 343.6 520 42.9
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.2e-92 343.6 520 42.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.4e-91 340.1 438 50.2
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.4e-91 340.1 404 49.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 7.8e-90 335.1 333 55.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.0e-89 333.2 472 46.4
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 8.6e-89 331.6 473 43.1
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 5.6e-88 328.9 473 43.1
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 7.3e-88 328.6 397 48.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-87 327.4 395 47.1
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-87 327.4 395 47.1
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.1e-87 327.0 449 43.9
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.8e-86 323.9 410 51.0
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.8e-86 323.9 468 40.6
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.0e-86 322.8 470 43.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.2e-85 321.2 476 42.0
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 7.6e-85 318.5 452 49.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.9e-84 316.6 430 46.5
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 4.9e-84 315.8 401 44.6
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.9e-84 315.8 479 43.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-83 314.7 331 54.4
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.7e-82 310.1 458 41.5
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.1e-79 300.4 428 43.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 9.0e-78 295.0 397 44.3
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 9.0e-78 295.0 431 43.4
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.9e-72 277.3 413 43.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.4e-70 271.2 428 40.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.4e-70 270.4 443 41.8
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 2.6e-69 266.9 552 35.1
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.5e-69 266.2 302 54.0
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.1e-67 261.5 439 40.5
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.9e-67 260.8 392 42.6
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 4.8e-63 246.1 427 38.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 4.5e-61 239.6 412 39.1
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.3e-60 238.0 397 39.5
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.4e-60 235.3 330 43.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 8.4e-60 235.3 455 37.1
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 7.1e-59 232.3 452 40.7
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.7e-58 230.3 385 40.8
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.3e-57 228.0 328 41.2
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 8.2e-55 218.8 442 36.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.3e-52 211.5 397 35.3
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.1e-42 177.6 218 52.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 2.8e-39 167.2 365 34.0
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.8e-39 166.4 733 24.4
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 5.0e-36 156.4 211 46.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.2e-34 151.8 214 46.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.3e-31 141.7 296 37.2
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.7e-31 141.4 390 31.0
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.2e-31 141.0 665 24.7
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.1e-30 137.1 214 43.5
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.8e-23 114.0 153 41.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.7e-23 113.6 221 38.9
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.4e-22 111.7 181 37.0
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 5.3e-22 109.8 221 37.6
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 9.1e-22 109.0 591 22.2
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.2e-21 108.6 120 45.0
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.5e-21 106.7 180 37.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 6.5e-20 102.8 205 36.1
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.1e-18 96.3 164 37.2
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.0e-17 95.5 82 58.5
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 3.4e-16 90.5 116 42.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 5.7e-16 89.7 201 34.3
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 5.7e-16 89.7 74 48.6
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 9.8e-16 89.0 211 32.2
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 9.8e-16 89.0 505 25.0
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 2.2e-15 87.8 116 39.7
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.4e-14 85.1 207 33.8
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.2e-12 77.8 72 45.8
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.8e-12 77.0 152 34.9
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.2e-10 72.0 159 37.7
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.6e-10 71.6 166 33.7
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 4.0e-09 67.0 310 24.5
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 9.8e-08 62.4 110 40.9
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 3.7e-07 60.5 109 39.4
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.8e-06 58.2 64 45.3
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 3.1e-06 57.4 95 36.8
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 4.1e-06 57.0 95 35.8
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 4.1e-06 57.0 48 47.9
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 5.4e-06 56.6 96 36.5
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 7.0e-06 56.2 96 35.4
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 9.1e-06 55.8 96 34.4


User provided reference genes

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