Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0115_0003 Quercus lobata HOM05D003291 ORTHO05D337926 3.6e-123 444.9 222 100.0
QL02p005770 Quercus lobata HOM05D003291 ORTHO05D338173 2.4e-119 432.2 216 100.0
Haze_17560 Corylus avellana HOM05D003291 ORTHO05D003923 5.9e-49 198.4 183 60.1
CiPaw.16G047500 Carya illinoinensis HOM05D003291 ORTHO05D003923 8.6e-40 167.9 153 62.1
THA.LOC104813013 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 6.4e-35 151.8 175 53.1
Dinv35983 Davidia involucrata HOM05D003291 ORTHO05D003923 1.9e-34 150.2 175 51.4
ECA232G2639 Erigeron canadensis HOM05D003291 ORTHO05D003923 1.9e-34 150.2 175 50.9
THA.LOC104806367 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 1.9e-34 150.2 175 52.6
Phvul.001G019800 Phaseolus vulgaris HOM05D003291 ORTHO05D003923 3.2e-34 149.4 167 52.1
Glyma.14G080800 Glycine max HOM05D003291 ORTHO05D003923 7.1e-34 148.3 167 51.5
TWI56G0991 Tripterygium wilfordii HOM05D003291 ORTHO05D003923 7.1e-34 148.3 173 51.4
HanXRQChr16g0507451 Helianthus annuus HOM05D003291 ORTHO05D003923 9.2e-34 147.9 166 50.6
Cfa018515 Carpinus fangiana HOM05D003291 ORTHO05D003923 1.2e-33 147.5 176 51.1
Ciclev10000140m.g Citrus clementina HOM05D003291 ORTHO05D003923 1.2e-33 147.5 163 52.8
Glyma.17G244600 Glycine max HOM05D003291 ORTHO05D003923 1.6e-33 147.1 167 51.5
Hma1.2p1_0260F.1_g104760 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 2.1e-33 146.7 147 55.1
Sp7g21090 Schrenkiella parvula HOM05D003291 ORTHO05D003923 2.1e-33 146.7 173 51.4
VMungo0647G0987 Vigna mungo HOM05D003291 ORTHO05D003923 2.1e-33 146.7 167 51.5
CSS0020917 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 2.7e-33 146.4 147 55.1
CSS0029839 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 2.7e-33 146.4 147 55.1
Nn5g30207 Nelumbo nucifera HOM05D003291 ORTHO05D003923 2.7e-33 146.4 173 49.1
SalBow4G1770 Salvia bowleyana HOM05D003291 ORTHO05D003923 4.6e-33 145.6 147 55.1
Potri.014G034400 Populus trichocarpa HOM05D003291 ORTHO05D003923 6.0e-33 145.2 147 54.4
Rhsim06G0046900 Rhododendron simsii HOM05D003291 ORTHO05D003923 6.0e-33 145.2 175 49.7
Manes.05G171000 Manihot esculenta HOM05D003291 ORTHO05D003923 1.0e-32 144.4 164 50.0
Aqoxy5G01279 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 1.3e-32 144.1 163 49.7
vmacro21555 Vaccinium macrocarpon HOM05D003291 ORTHO05D003923 1.3e-32 144.1 175 49.7
CARHR254510 Cardamine hirsuta HOM05D003291 ORTHO05D003923 2.3e-32 143.3 171 49.1
Haze_17561 Corylus avellana HOM05D003291 ORTHO05D003923 3.0e-32 142.9 200 48.0
SalBow6G1638 Salvia bowleyana HOM05D003291 ORTHO05D003923 3.0e-32 142.9 147 54.4
SalBow6G6854 Salvia bowleyana HOM05D003291 ORTHO05D003923 3.0e-32 142.9 147 54.4
ECA246G0633 Erigeron canadensis HOM05D003291 ORTHO05D003923 3.9e-32 142.5 144 52.1
EL10Ac1g01777 Beta vulgaris HOM05D003291 ORTHO05D003923 5.1e-32 142.1 166 50.0
Cpa.g.sc1124.3 Carica papaya HOM05D003291 ORTHO05D003923 5.1e-32 142.1 175 50.3
Migut.C00602 Erythranthe guttata HOM05D003291 ORTHO05D003923 5.1e-32 142.1 147 53.7
Hma1.2p1_0337F.1_g129290 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 5.1e-32 142.1 144 53.5
Lj4C776G1 Lonicera japonica HOM05D003291 ORTHO05D003923 5.1e-32 142.1 147 53.7
GSVIVG01009556001 Vitis vinifera HOM05D003291 ORTHO05D003923 6.6e-32 141.7 172 49.4
AT4G23000 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 8.6e-32 141.4 167 50.9
Carub.0007s1827 Capsella rubella HOM05D003291 ORTHO05D003923 8.6e-32 141.4 173 50.3
Lsat_1_v5_gn_4_124081 Lactuca sativa HOM05D003291 ORTHO05D003923 8.6e-32 141.4 147 52.4
Sabra14G0024400 Salix brachista HOM05D003291 ORTHO05D003923 8.6e-32 141.4 147 53.1
MSTRG.1333 Avicennia marina HOM05D003291 ORTHO05D003923 1.1e-31 141.0 147 53.1
Cc10_g04020 Coffea canephora HOM05D003291 ORTHO05D003923 1.1e-31 141.0 147 54.4
Nn1g05846 Nelumbo nucifera HOM05D003291 ORTHO05D003923 1.1e-31 141.0 144 52.8
Lj5g0021120 Lotus japonicus HOM05D003291 ORTHO05D003923 1.9e-31 140.2 166 50.6
MBI03_g42553_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 1.9e-31 140.2 174 50.0
PSO170G2235 Papaver somniferum HOM05D003291 ORTHO05D003923 1.9e-31 140.2 145 53.1
PSO210G0952 Papaver somniferum HOM05D003291 ORTHO05D003923 1.9e-31 140.2 145 53.1
DCAR_028414 Daucus carota HOM05D003291 ORTHO05D003923 3.3e-31 139.4 144 54.2
Carub.0006s3091 Capsella rubella HOM05D003291 ORTHO05D003923 4.3e-31 139.0 170 48.2
Oeu009557.1 Olea europaea HOM05D003291 ORTHO05D003923 4.3e-31 139.0 147 51.7
Atru.chr13.635 Acer truncatum HOM05D003291 ORTHO05D003923 5.6e-31 138.7 164 51.2
CARHR230060 Cardamine hirsuta HOM05D003291 ORTHO05D003923 5.6e-31 138.7 145 53.1
CANSAT25G2224 Cannabis sativa HOM05D003291 ORTHO05D003923 7.3e-31 138.3 145 51.7
Oeu043547.1 Olea europaea HOM05D003291 ORTHO05D003923 7.3e-31 138.3 147 51.7
Solyc04g079300.3 Solanum lycopersicum HOM05D003291 ORTHO05D003923 7.3e-31 138.3 147 52.4
Sopen04g032890 Solanum pennellii HOM05D003291 ORTHO05D003923 7.3e-31 138.3 147 52.4
COL.COLO4_26461 Corchorus olitorius HOM05D003291 ORTHO05D003923 9.5e-31 137.9 175 48.0
THA.LOC104814278 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 9.5e-31 137.9 166 51.8
MD15G1086800 Malus domestica HOM05D003291 ORTHO05D003923 1.2e-30 137.5 162 50.6
Oeu006153.2 Olea europaea HOM05D003291 ORTHO05D003923 1.6e-30 137.1 147 51.0
FAN27G0136 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.1e-30 136.7 155 50.3
AL6G46510 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 2.8e-30 136.3 170 47.6
CAN.G1422.3 Capsicum annuum HOM05D003291 ORTHO05D003923 2.8e-30 136.3 145 50.3
CAN.G371.46 Capsicum annuum HOM05D003291 ORTHO05D003923 2.8e-30 136.3 147 51.0
FvH4_2g34860 Fragaria vesca HOM05D003291 ORTHO05D003923 3.6e-30 136.0 147 51.0
Pp3c5_1910 Physcomitrium patens HOM05D003291 ORTHO05D003923 3.6e-30 136.0 176 46.0
FAN15G0927 Fragaria x ananassa HOM05D003291 ORTHO05D003923 6.2e-30 135.2 147 51.0
MD00G1187500 Malus domestica HOM05D003291 ORTHO05D003923 6.2e-30 135.2 147 51.7
MD08G1106200 Malus domestica HOM05D003291 ORTHO05D003923 6.2e-30 135.2 147 51.7
Aqoxy6G01378 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 8.1e-30 134.8 173 46.8
Thecc.08G012800 Theobroma cacao HOM05D003291 ORTHO05D003923 8.1e-30 134.8 172 47.7
Prupe.1G440500 Prunus persica HOM05D003291 ORTHO05D003923 1.1e-29 134.4 166 48.2
Eucgr.F02708 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.4e-29 134.0 144 49.3
FAN20G0796 Fragaria x ananassa HOM05D003291 ORTHO05D003923 1.8e-29 133.7 147 50.3
RcHm_v2.0_Chr6g0307181 Rosa chinensis HOM05D003291 ORTHO05D003923 2.3e-29 133.3 147 49.7
AT4G11800 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 3.1e-29 132.9 158 47.5
Solyc12g088920.2 Solanum lycopersicum HOM05D003291 ORTHO05D003923 3.1e-29 132.9 145 50.3
Sopen12g030820 Solanum pennellii HOM05D003291 ORTHO05D003923 3.1e-29 132.9 145 50.3
HanXRQChr02g0056101 Helianthus annuus HOM05D003291 ORTHO05D003923 5.2e-29 132.1 124 54.0
CDE03G0102 Ceratophyllum demersum HOM05D003291 ORTHO05D003923 8.9e-29 131.3 172 46.5
HPP92_016679 Vanilla planifolia HOM05D003291 ORTHO05D003923 8.9e-29 131.3 175 45.1
A03p53920 Brassica napus HOM05D003291 ORTHO05D003923 1.2e-28 131.0 141 51.1
C07p52330 Brassica napus HOM05D003291 ORTHO05D003923 1.2e-28 131.0 141 51.1
BolC7t45726H Brassica oleracea HOM05D003291 ORTHO05D003923 1.2e-28 131.0 141 51.1
BraA03t14461Z Brassica rapa HOM05D003291 ORTHO05D003923 1.2e-28 131.0 141 51.1
Lsat_1_v5_gn_6_113580 Lactuca sativa HOM05D003291 ORTHO05D003923 1.2e-28 131.0 144 50.0
Duzib093G1598 Durio zibethinus HOM05D003291 ORTHO05D003923 1.5e-28 130.6 175 46.3
Sed0000864 Sechium edule HOM05D003291 ORTHO05D003923 2.6e-28 129.8 147 49.0
arahy.Tifrunner.gnm1.ann1.H8JSRB Arachis hypogaea HOM05D003291 ORTHO05D003923 3.4e-28 129.4 124 54.8
arahy.Tifrunner.gnm1.ann1.NP9S9N Arachis hypogaea HOM05D003291 ORTHO05D003923 3.4e-28 129.4 124 54.8
Gohir.A06G016600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 4.4e-28 129.0 126 52.4
Gohir.A05G200600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 7.6e-28 128.3 124 53.2
Gohir.D05G203800 Gossypium hirsutum HOM05D003291 ORTHO05D003923 7.6e-28 128.3 124 53.2
Gorai.009G209900 Gossypium raimondii HOM05D003291 ORTHO05D003923 7.6e-28 128.3 124 53.2
Ca_13307_v3 Cicer arietinum L. HOM05D003291 ORTHO05D003923 9.9e-28 127.9 122 53.3
SMO358G0100 Selaginella moellendorffii HOM05D003291 ORTHO05D003923 9.9e-28 127.9 144 49.3
SEGI_30325 Sequoiadendron giganteum HOM05D003291 ORTHO05D003923 9.9e-28 127.9 160 45.6
BraA02t07596Z Brassica rapa HOM05D003291 ORTHO05D003923 1.7e-27 127.1 173 45.1
CiPaw.16G047600 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.7e-27 127.1 127 52.8
MELO3C010890.2 Cucumis melo HOM05D003291 ORTHO05D003923 2.9e-27 126.3 120 53.3
AUR62022448 Chenopodium quinoa HOM05D003291 ORTHO05D003923 6.4e-27 125.2 166 45.2
Gohir.D06G014700 Gossypium hirsutum HOM05D003291 ORTHO05D003923 8.4e-27 124.8 127 51.2
Gorai.010G017500 Gossypium raimondii HOM05D003291 ORTHO05D003923 8.4e-27 124.8 127 51.2
Mapoly0020s0063 Marchantia polymorpha HOM05D003291 ORTHO05D003923 8.4e-27 124.8 160 46.9
Medtr1g020000 Medicago truncatula HOM05D003291 ORTHO05D003923 8.4e-27 124.8 124 53.2
QL02p005806 Quercus lobata HOM05D003291 ORTHO05D003923 8.4e-27 124.8 122 52.5
Zm00001eb096290 Zea mays HOM05D003291 ORTHO05D003923 1.1e-26 124.4 173 43.4
A09p27310 Brassica napus HOM05D003291 ORTHO05D003923 1.4e-26 124.0 120 50.8
BraA09t38297Z Brassica rapa HOM05D003291 ORTHO05D003923 1.4e-26 124.0 120 50.8
Thhalv10028387m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 1.4e-26 124.0 173 43.9
Aa31LG9G10630 Aethionema arabicum HOM05D003291 ORTHO05D003923 1.9e-26 123.6 173 43.9
A02p25980 Brassica napus HOM05D003291 ORTHO05D003923 1.9e-26 123.6 169 44.4
ATR0709G069 Amborella trichopoda HOM05D003291 ORTHO05D003923 2.4e-26 123.2 172 43.6
C02p41460 Brassica napus HOM05D003291 ORTHO05D003923 2.4e-26 123.2 169 43.8
Psat6g012080 Pisum sativum HOM05D003291 ORTHO05D003923 2.4e-26 123.2 124 50.8
BcaB05g23806 Brassica carinata HOM05D003291 ORTHO05D003923 3.2e-26 122.9 173 43.4
CsaV3_2G028120 Cucumis sativus L. HOM05D003291 ORTHO05D003923 3.2e-26 122.9 147 47.6
TPR.G13691 Trifolium pratense HOM05D003291 ORTHO05D003923 3.2e-26 122.9 167 46.1
Ah.05g168860 Amaranthus hybridus HOM05D003291 ORTHO05D003923 4.1e-26 122.5 167 45.5
BcaC03g16327 Brassica carinata HOM05D003291 ORTHO05D003923 4.1e-26 122.5 173 43.4
BolC2t10163H Brassica oleracea HOM05D003291 ORTHO05D003923 4.1e-26 122.5 173 43.4
SHI08307 Sapria himalayana HOM05D003291 ORTHO05D003923 4.1e-26 122.5 166 47.0
AL7G30520 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 5.4e-26 122.1 167 46.1
TAR625G0168 Trochodendron aralioides HOM05D003291 ORTHO05D003923 7.1e-26 121.7 180 42.8
SGA_v2.0_scaffold208G42005 Striga asiatica HOM05D003291 ORTHO05D003923 9.2e-26 121.3 124 50.0
Pp3c1_37890 Physcomitrium patens HOM05D003291 ORTHO05D003923 2.1e-25 120.2 159 44.7
Lalb_Chr14g0368841 Lupinus albus HOM05D003291 ORTHO05D003923 2.7e-25 119.8 119 50.4
C09p34640 Brassica napus HOM05D003291 ORTHO05D003923 3.5e-25 119.4 164 43.9
BolC9t56309H Brassica oleracea HOM05D003291 ORTHO05D003923 3.5e-25 119.4 164 43.9
Sp6g05650 Schrenkiella parvula HOM05D003291 ORTHO05D003923 6.0e-25 118.6 173 42.8
BcaB01g01679 Brassica carinata HOM05D003291 ORTHO05D003923 7.8e-25 118.2 164 43.9
CSS0046933 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.3e-24 117.5 123 54.5
Eucgr.B02927 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.7e-24 117.1 146 44.5
Nitab4.5_0000068g0460 Nicotiana tabacum HOM05D003291 ORTHO05D003923 5.1e-24 115.5 144 47.2
Nitab4.5_0005301g0010 Nicotiana tabacum HOM05D003291 ORTHO05D003923 8.6e-24 114.8 144 47.9
Thhalv10024304m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 1.1e-23 114.4 111 51.4
CiPaw.16G049300 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.9e-23 113.6 125 53.6
ClCG08G015660 Citrullus lanatus HOM05D003291 ORTHO05D003923 2.5e-23 113.2 108 51.9
Hund17590 Selenicereus undatus HOM05D003291 ORTHO05D003923 4.3e-23 112.5 109 51.4
Nitab4.5_0011844g0020 Nicotiana tabacum HOM05D003291 ORTHO05D003923 1.6e-22 110.5 117 46.2
Nitab4.5_0000453g0160 Nicotiana tabacum HOM05D003291 ORTHO05D003923 3.6e-22 109.4 142 44.4
Lalb_Chr22g0355231 Lupinus albus HOM05D003291 ORTHO05D003923 8.1e-22 108.2 123 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1909 Anthoceros agrestis HOM05D003291 ORTHO05D003923 2.0e-20 103.6 129 48.1
HanXRQChr09g0267981 Helianthus annuus HOM05D003291 ORTHO05D003923 2.6e-20 103.2 125 47.2
Haze_17564 Corylus avellana HOM05D003291 ORTHO05D003923 6.0e-17 92.0 170 40.6
HanXRQChr09g0267941 Helianthus annuus HOM05D003291 ORTHO05D003923 1.0e-16 91.3 126 41.3
Cfa018512 Carpinus fangiana HOM05D003291 ORTHO05D003923 2.3e-16 90.1 170 40.0
CBR_g767 Chara braunii HOM05D003291 ORTHO05D000048 1.9e-15 87.0 128 38.3
Peaxi162Scf00528g00823 Petunia axillaris HOM05D003291 ORTHO05D003923 1.9e-15 87.0 147 39.5
Sc02g0006960 Simmondsia chinensis HOM05D003291 ORTHO05D003923 2.5e-15 86.7 92 50.0
DCAR_023940 Daucus carota HOM05D003291 ORTHO05D003923 3.3e-15 86.3 169 39.6
Zm00001eb298290 Zea mays HOM05D003291 ORTHO05D003923 2.1e-14 83.6 92 48.9
AagrBONN_evm.TU.Sc2ySwM_228.3178 Anthoceros agrestis HOM05D003291 ORTHO05D003923 3.6e-14 82.8 77 54.5
Os07g0106000 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 4.8e-14 82.4 92 47.8
HanXRQChr10g0304011 Helianthus annuus HOM05D003291 ORTHO05D003923 8.1e-14 81.6 77 50.6
AUR62039319 Chenopodium quinoa HOM05D003291 ORTHO05D003923 1.8e-13 80.5 92 46.7
Actinidia15259 Actinidia chinensis HOM05D003291 ORTHO05D003923 9.0e-13 78.2 63 63.5
Actinidia38048 Actinidia chinensis HOM05D003291 ORTHO05D003923 2.0e-12 77.0 86 47.7
Dinv08769 Davidia involucrata HOM05D003291 ORTHO05D003923 2.9e-11 73.2 89 50.6
unitig_26.g9818 Utricularia gibba HOM05D003291 ORTHO05D003923 1.5e-07 60.8 70 51.4
Sc02g0006950 Simmondsia chinensis HOM05D003291 ORTHO05D003923 4.3e-07 59.3 53 62.3
Actinidia27513 Actinidia chinensis HOM05D003291 ORTHO05D003923 6.2e-06 55.5 57 47.4
Duzib116G0711 Durio zibethinus HOM05D003291 ORTHO05D003923 8.1e-06 55.1 90 45.6


User provided reference genes

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