Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p041387 Quercus lobata HOM05D006532 ORTHO05D008570 1.9e-176 622.5 331 100.0
Cfa013365 Carpinus fangiana HOM05D006532 ORTHO05D008570 6.0e-138 494.6 326 82.2
CiPaw.07G204300 Carya illinoinensis HOM05D006532 ORTHO05D008570 5.2e-134 481.5 326 79.1
Thecc.09G045200 Theobroma cacao HOM05D006532 ORTHO05D008570 6.2e-127 458.0 328 77.4
Cpa.g.c24654.2 Carica papaya HOM05D006532 ORTHO05D008570 1.8e-126 456.4 329 75.4
Prupe.1G448300 Prunus persica HOM05D006532 ORTHO05D008570 1.2e-125 453.8 327 76.1
Manes.16G075600 Manihot esculenta HOM05D006532 ORTHO05D008570 2.9e-124 449.1 325 76.3
MD08G1113700 Malus domestica HOM05D006532 ORTHO05D008570 1.4e-123 446.8 326 76.4
TAR383G0022 Trochodendron aralioides HOM05D006532 ORTHO05D008570 1.9e-123 446.4 327 73.1
THA.LOC104803760 Tarenaya hassleriana HOM05D006532 ORTHO05D008570 1.6e-122 443.4 329 74.5
Gohir.D05G048600 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.1e-122 443.0 330 76.4
AL4G17550 Arabidopsis lyrata HOM05D006532 ORTHO05D008570 2.3e-121 439.5 329 72.9
Gorai.009G049900 Gossypium raimondii HOM05D006532 ORTHO05D008570 3.9e-121 438.7 330 75.5
Atru.chr7.2089 Acer truncatum HOM05D006532 ORTHO05D008570 1.5e-120 436.8 327 73.7
Ciclev10008913m.g Citrus clementina HOM05D006532 ORTHO05D008570 2.5e-120 436.0 327 73.7
RcHm_v2.0_Chr6g0306211 Rosa chinensis HOM05D006532 ORTHO05D008570 5.6e-120 434.9 326 73.6
Actinidia13336 Actinidia chinensis HOM05D006532 ORTHO05D008570 9.6e-120 434.1 327 70.0
Carub.0004s0565 Capsella rubella HOM05D006532 ORTHO05D008570 9.6e-120 434.1 332 72.6
Potri.006G238400 Populus trichocarpa HOM05D006532 ORTHO05D008570 1.3e-119 433.7 326 72.4
AT2G25830 Arabidopsis thaliana HOM05D006532 ORTHO05D008570 1.6e-119 433.3 331 71.6
CSS0019039 Camellia sinensis var. sinensis HOM05D006532 ORTHO05D008570 1.6e-119 433.3 326 72.4
Sp4g05660 Schrenkiella parvula HOM05D006532 ORTHO05D008570 2.1e-119 433.0 328 72.3
Sabra06G0186500 Salix brachista HOM05D006532 ORTHO05D008570 3.6e-119 432.2 322 73.0
Thhalv10002038m.g Eutrema salsugineum HOM05D006532 ORTHO05D008570 4.8e-119 431.8 330 71.5
BolC4t27098H Brassica oleracea HOM05D006532 ORTHO05D008570 6.2e-119 431.4 330 71.2
GSVIVG01035625001 Vitis vinifera HOM05D006532 ORTHO05D008570 1.8e-118 429.9 326 72.4
C04p55710 Brassica napus HOM05D006532 ORTHO05D008570 2.4e-118 429.5 333 70.0
A04p20040 Brassica napus HOM05D006532 ORTHO05D008570 4.0e-118 428.7 334 70.1
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 6.9e-118 427.9 318 75.2
Lalb_Chr08g0243051 Lupinus albus HOM05D006532 ORTHO05D008570 6.9e-118 427.9 266 83.5
FvH4_2g35600 Fragaria vesca HOM05D006532 ORTHO05D008570 4.5e-117 425.2 326 71.8
PGR031G1209 Punica granatum HOM05D006532 ORTHO05D008570 4.5e-117 425.2 328 71.6
Rhsim02G0178300 Rhododendron simsii HOM05D006532 ORTHO05D008570 4.5e-117 425.2 326 69.6
Dinv27901 Davidia involucrata HOM05D006532 ORTHO05D008570 1.3e-116 423.7 293 76.5
FAN27G1267 Fragaria x ananassa HOM05D006532 ORTHO05D008570 2.2e-116 422.9 326 71.5
Aqoxy7G03906 Aquilegia oxysepala HOM05D006532 ORTHO05D008570 3.8e-116 422.2 326 69.3
FAN15G2034 Fragaria x ananassa HOM05D006532 ORTHO05D008570 3.8e-116 422.2 326 71.2
Aa31LG5G9920 Aethionema arabicum HOM05D006532 ORTHO05D008570 6.4e-116 421.4 351 67.0
Nitab4.5_0003794g0050 Nicotiana tabacum HOM05D006532 ORTHO05D008570 1.4e-115 420.2 326 70.9
Sed0025155 Sechium edule HOM05D006532 ORTHO05D008570 1.4e-115 420.2 259 83.8
Phvul.009G109800 Phaseolus vulgaris HOM05D006532 ORTHO05D008570 3.2e-115 419.1 293 75.4
Eucgr.C00591 Eucalyptus grandis HOM05D006532 ORTHO05D008570 1.2e-114 417.2 327 70.3
Glyma.06G085900 Glycine max HOM05D006532 ORTHO05D008570 1.2e-114 417.2 284 77.8
Migut.A00204 Erythranthe guttata HOM05D006532 ORTHO05D008570 2.7e-114 416.0 328 69.5
Lsat_1_v5_gn_6_23160 Lactuca sativa HOM05D006532 ORTHO05D008570 3.5e-114 415.6 328 69.8
arahy.Tifrunner.gnm1.ann1.WYW67Z Arachis hypogaea HOM05D006532 ORTHO05D008570 1.3e-113 413.7 291 78.0
Ca_15592_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 1.8e-113 413.3 302 75.2
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 1.8e-113 413.3 327 68.5
Oeu038806.1 Olea europaea HOM05D006532 ORTHO05D008570 2.3e-113 412.9 330 69.7
ClCG08G012230 Citrullus lanatus HOM05D006532 ORTHO05D008570 5.1e-113 411.8 373 64.9
EL10Ac2g04018 Beta vulgaris HOM05D006532 ORTHO05D008570 8.7e-113 411.0 327 68.5
vmacro11058 Vaccinium macrocarpon HOM05D006532 ORTHO05D008570 1.1e-112 410.6 348 65.8
MELO3C011141.2 Cucumis melo HOM05D006532 ORTHO05D008570 1.5e-112 410.2 324 71.0
Solyc08g066640.3 Solanum lycopersicum HOM05D006532 ORTHO05D008570 1.9e-112 409.8 326 69.0
CsaV3_2G030860 Cucumis sativus L. HOM05D006532 ORTHO05D008570 3.3e-112 409.1 324 69.4
CDE02G1820 Ceratophyllum demersum HOM05D006532 ORTHO05D008570 4.3e-112 408.7 325 68.0
Sopen08g020510 Solanum pennellii HOM05D006532 ORTHO05D008570 5.6e-112 408.3 327 69.1
VMungo1309G2674 Vigna mungo HOM05D006532 ORTHO05D008570 5.6e-112 408.3 293 74.1
Peaxi162Scf00227g00717 Petunia axillaris HOM05D006532 ORTHO05D008570 9.6e-112 407.5 326 69.3
MBI04_g45213_MAGBIO Magnolia biondii HOM05D006532 ORTHO05D008570 1.3e-111 407.1 328 68.3
PGSC0003DMG402002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 2.8e-111 406.0 331 67.7
Cc08_g09550 Coffea canephora HOM05D006532 ORTHO05D008570 1.1e-110 404.1 326 69.3
SGA_v2.0_scaffold75G25009 Striga asiatica HOM05D006532 ORTHO05D008570 9.0e-110 401.0 326 69.0
TWI63G1016 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 9.0e-110 401.0 330 67.3
AUR62009283 Chenopodium quinoa HOM05D006532 ORTHO05D008570 1.5e-109 400.2 328 67.4
HanXRQChr02g0050581 Helianthus annuus HOM05D006532 ORTHO05D008570 1.5e-109 400.2 326 67.8
TPR.G15104 Trifolium pratense HOM05D006532 ORTHO05D008570 4.5e-109 398.7 326 68.1
CAN.G400.2 Capsicum annuum HOM05D006532 ORTHO05D008570 1.3e-108 397.1 327 68.8
MSTRG.11698 Avicennia marina HOM05D006532 ORTHO05D008570 2.2e-108 396.4 327 69.7
Lj1g0025870 Lotus japonicus HOM05D006532 ORTHO05D008570 2.2e-108 396.4 303 71.6
Sc23g0005260 Simmondsia chinensis HOM05D006532 ORTHO05D008570 2.2e-108 396.4 326 67.2
CARHR115400 Cardamine hirsuta HOM05D006532 ORTHO05D008570 2.9e-108 396.0 344 65.7
Medtr3g109620 Medicago truncatula HOM05D006532 ORTHO05D008570 2.9e-108 396.0 345 65.5
TWI63G0186 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 3.8e-108 395.6 330 67.6
arahy.Tifrunner.gnm1.ann1.W7W61Q Arachis hypogaea HOM05D006532 ORTHO05D008570 4.9e-108 395.2 297 73.1
CANSAT25G2817 Cannabis sativa HOM05D006532 ORTHO05D008570 2.5e-107 392.9 248 83.5
Hma1.2p1_1138F.1_g260800 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 4.6e-106 388.7 247 80.6
ATR0705G133 Amborella trichopoda HOM05D006532 ORTHO05D008570 1.0e-105 387.5 266 75.6
SalBow4G2374 Salvia bowleyana HOM05D006532 ORTHO05D008570 1.3e-105 387.1 327 67.3
DCAR_004469 Daucus carota HOM05D006532 ORTHO05D008570 1.3e-103 380.6 325 64.0
Nn8g39129 Nelumbo nucifera HOM05D006532 ORTHO05D008570 6.3e-103 378.3 234 82.9
Hund19514 Selenicereus undatus HOM05D006532 ORTHO05D008570 8.2e-103 377.9 360 61.7
PSO210G1609 Papaver somniferum HOM05D006532 ORTHO05D008570 1.5e-101 373.6 295 67.1
Lj8A581T27 Lonicera japonica HOM05D006532 ORTHO05D008570 2.7e-98 362.8 236 78.8
Ah.10g035030 Amaranthus hybridus HOM05D006532 ORTHO05D008570 6.1e-98 361.7 335 61.2
Zm00001eb293770 Zea mays HOM05D006532 ORTHO05D008570 4.1e-94 349.0 257 69.3
Os05g0519800 Oryza sativa ssp. japonica HOM05D006532 ORTHO05D008570 1.2e-93 347.4 267 68.9
FAN20G1106 Fragaria x ananassa HOM05D006532 ORTHO05D008570 2.0e-93 346.7 248 73.0
Duzib168G2121 Durio zibethinus HOM05D006532 ORTHO05D008570 3.4e-93 345.9 257 75.5
HPP92_022975 Vanilla planifolia HOM05D006532 ORTHO05D008570 6.5e-92 341.7 330 60.0
Nitab4.5_0001894g0020 Nicotiana tabacum HOM05D006532 ORTHO05D008570 5.5e-91 338.6 221 77.8
unitig_748.g7511 Utricularia gibba HOM05D006532 ORTHO05D008570 3.0e-89 332.8 233 73.4
Haze_21888 Corylus avellana HOM05D006532 ORTHO05D008570 8.8e-89 331.3 263 71.1
Hund03396 Selenicereus undatus HOM05D006532 ORTHO05D008570 1.7e-87 327.0 268 66.8
Glyma.04G084200 Glycine max HOM05D006532 ORTHO05D008570 2.4e-86 323.2 272 65.4
AUR62039700 Chenopodium quinoa HOM05D006532 ORTHO05D008570 5.3e-86 322.0 328 57.6
Hma1.2p1_1753F.1_g300870 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 1.8e-81 307.0 222 73.4
Psat0s1928g0160 Pisum sativum HOM05D006532 ORTHO05D008570 5.7e-80 302.0 260 64.6
Eucgr.C00548 Eucalyptus grandis HOM05D006532 ORTHO05D008570 1.1e-78 297.7 230 68.7
SEGI_00611 Sequoiadendron giganteum HOM05D006532 ORTHO05D008570 3.8e-76 289.3 214 65.4
Mapoly0061s0140 Marchantia polymorpha HOM05D006532 ORTHO05D008570 8.8e-73 278.1 258 55.4
AagrBONN_evm.TU.Sc2ySwM_117.144 Anthoceros agrestis HOM05D006532 ORTHO05D008570 1.3e-68 264.2 276 50.0
Pp3c1_5570 Physcomitrium patens HOM05D006532 ORTHO05D008570 5.5e-67 258.8 261 51.3
SMO134G0241 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 1.3e-60 237.7 250 51.6
SMO145G0084 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 4.2e-59 232.6 267 46.1
SMO367G0375 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 1.2e-58 231.1 248 52.4
CBR_g34330 Chara braunii HOM05D006532 ORTHO05D008570 1.0e-57 228.0 251 49.4
SMO139G0131 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 5.4e-54 215.7 252 46.0
Gohir.A05G046832 Gossypium hirsutum HOM05D006532 ORTHO05D008570 5.6e-51 205.7 127 83.5
MCO01G189 Micromonas commoda HOM05D006532 ORTHO05D008570 8.9e-49 198.4 251 42.6
Gohir.A05G046766 Gossypium hirsutum HOM05D006532 ORTHO05D008570 3.4e-48 196.4 169 70.4
SGA_v2.0_scaffold88G27190 Striga asiatica HOM05D006532 ORTHO05D008570 1.4e-41 174.5 125 73.6
Cre02.g097550 Chlamydomonas reinhardtii HOM05D006532 ORTHO05D008570 1.5e-40 171.0 246 41.5
PRCOL_00005453 Prasinoderma coloniale HOM05D006532 ORTHO05D008570 2.4e-38 163.7 246 37.0
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.1e-27 128.3 327 36.7
Ca_28981_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 1.5e-24 117.9 244 30.3
Ca_28852_v3 Cicer arietinum L. HOM05D006532 ORTHO05D148468 1.6e-21 107.8 319 29.5
Sc11g0003830 Simmondsia chinensis HOM05D006532 ORTHO05D387458 9.9e-08 62.0 52 61.5
Atru.chr6.459 Acer truncatum HOM05D006532 ORTHO05D008570 2.9e-07 60.5 148 38.5
Hund03397 Selenicereus undatus HOM05D006532 ORTHO05D381031 1.4e-06 58.2 30 96.7


User provided reference genes

Program Settings