Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 4.3e-103 377.9 174 100.0
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 4.4e-100 367.9 174 95.4
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 1.3e-99 366.3 174 96.0
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 1.7e-99 365.9 174 96.0
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 1.7e-99 365.9 174 96.0
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 1.7e-99 365.9 174 96.6
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.7e-99 365.9 174 94.8
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 1.7e-99 365.9 174 96.0
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.2e-99 365.5 174 94.8
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 2.9e-99 365.2 174 96.0
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 2.9e-99 365.2 175 96.0
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 2.9e-99 365.2 174 96.0
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 4.9e-99 364.4 174 94.3
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.9e-99 364.4 174 94.3
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 6.4e-99 364.0 174 95.4
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 6.4e-99 364.0 174 95.4
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.4e-99 364.0 174 94.3
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 8.4e-99 363.6 174 94.3
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 8.4e-99 363.6 174 94.3
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 8.4e-99 363.6 174 94.3
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 8.4e-99 363.6 174 94.3
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 1.1e-98 363.2 174 94.3
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 1.1e-98 363.2 174 94.3
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.9e-98 362.5 174 93.1
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.4e-98 362.1 174 93.7
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.4e-98 362.1 174 93.7
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 2.4e-98 362.1 174 93.7
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.4e-98 362.1 174 93.1
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 3.2e-98 361.7 174 93.1
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.2e-98 361.7 174 93.7
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 3.2e-98 361.7 174 92.5
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 3.2e-98 361.7 174 95.4
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 4.2e-98 361.3 174 93.1
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.2e-98 361.3 174 93.1
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 4.2e-98 361.3 174 93.1
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 5.4e-98 360.9 174 93.1
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 5.4e-98 360.9 174 93.1
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 7.1e-98 360.5 174 93.1
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 7.1e-98 360.5 174 92.5
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 9.3e-98 360.1 174 93.1
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 9.3e-98 360.1 174 92.5
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 94.9
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 9.3e-98 360.1 174 92.5
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 1.2e-97 359.8 174 93.1
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.2e-97 359.8 174 93.1
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.5
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.5
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.5
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.5
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.5
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 2.1e-97 359.0 174 92.5
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 2.7e-97 358.6 174 92.0
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 2.7e-97 358.6 174 93.1
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 2.7e-97 358.6 174 92.5
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 4.6e-97 357.8 174 92.0
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 4.6e-97 357.8 174 92.5
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 6.0e-97 357.5 174 93.7
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 6.0e-97 357.5 174 92.0
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 7.8e-97 357.1 174 92.5
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 7.8e-97 357.1 174 93.1
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 1.0e-96 356.7 174 92.0
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.0e-96 356.7 174 92.0
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 1.3e-96 356.3 174 92.5
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 1.7e-96 355.9 174 92.0
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 1.7e-96 355.9 174 92.0
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 1.7e-96 355.9 174 90.8
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.7e-96 355.9 173 92.5
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.7e-96 355.9 174 92.5
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 3.9e-96 354.8 174 91.4
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 5.1e-96 354.4 174 91.4
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 5.1e-96 354.4 174 90.2
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 8.7e-96 353.6 174 90.8
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 92.0
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 174 90.2
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 174 92.0
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 174 92.0
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.5e-95 352.8 174 90.8
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.9e-95 352.4 174 91.4
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.9e-95 352.4 173 90.8
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 4.3e-95 351.3 174 90.2
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 4.3e-95 351.3 174 90.2
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 4.3e-95 351.3 174 90.2
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 5.6e-95 350.9 172 90.7
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 5.6e-95 350.9 173 90.8
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 9.6e-95 350.1 174 89.7
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 9.6e-95 350.1 174 89.7
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 9.6e-95 350.1 174 89.7
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 1.3e-94 349.7 174 89.7
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 2.1e-94 349.0 174 89.7
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 2.8e-94 348.6 173 91.3
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 4.8e-94 347.8 174 89.1
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 6.2e-94 347.4 173 90.2
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 8.1e-94 347.1 174 89.7
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 8.1e-94 347.1 174 89.7
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.8e-93 345.9 174 88.5
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.8e-93 345.9 174 88.5
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 2.4e-93 345.5 173 89.6
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 5.3e-93 344.4 174 89.7
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 5.3e-93 344.4 174 87.9
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 5.3e-93 344.4 171 88.3
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 9.0e-93 343.6 174 87.9
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.2e-92 343.2 173 91.9
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 1.2e-92 343.2 174 88.5
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.2e-92 343.2 174 89.1
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.3e-91 339.7 172 88.4
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.3e-91 339.7 172 88.4
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 6.4e-91 337.4 174 89.1
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 3.3e-87 325.1 174 83.3
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 1.6e-86 322.8 174 81.6
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 6.2e-86 320.9 243 65.0
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 8.1e-86 320.5 169 85.2
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 1.5e-84 316.2 167 83.2
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 5.8e-84 314.3 173 79.2
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 4.6e-81 304.7 169 78.7
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 1.0e-80 303.5 149 89.9
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 3.9e-80 301.6 173 76.9
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 3.3e-79 298.5 180 79.4
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 1.8e-77 292.7 174 73.0
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 4.2e-74 281.6 131 96.9
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 2.1e-73 279.3 165 70.9
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 5.1e-72 274.6 167 79.6
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 8.7e-72 273.9 132 93.2
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 5.7e-71 271.2 131 91.6
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 1.7e-67 259.6 164 68.9
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 7.9e-65 250.8 125 91.2
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 1.2e-60 236.9 124 86.3
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 4.5e-60 235.0 112 94.6
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.7e-57 225.7 125 82.4
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 5.1e-56 221.5 118 83.1
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 3.3e-55 218.8 114 88.6
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 4.8e-54 214.9 171 56.7
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.4e-50 203.4 112 76.8
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 3.2e-50 202.2 104 87.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 2.8e-46 189.1 142 67.6
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 7.7e-44 181.0 91 90.1
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 4.1e-37 158.7 88 81.8
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 4.2e-34 148.7 176 49.4
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 1.8e-32 143.3 113 61.9
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 6.3e-30 134.8 114 60.5
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.7e-27 126.7 65 86.2
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 2.0e-23 113.2 96 56.2


User provided reference genes

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