Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p039308 Quercus lobata HOM05D020723 ORTHO05D022460 3.0e-268 927.9 464 100.0
QL05p000993 Quercus lobata HOM05D020723 ORTHO05D022460 4.0e-172 608.6 490 65.7
QL05p001071 Quercus lobata HOM05D020723 ORTHO05D022460 3.3e-102 376.3 333 64.0
QL12p023260 Quercus lobata HOM05D000005 ORTHO05D000012 1.0e-58 231.9 197 59.9
QL09p053928 Quercus lobata HOM05D020723 ORTHO05D022460 2.4e-36 157.5 90 94.4
QL12p023329 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-26 124.8 184 39.1
Nn8g40948 Nelumbo nucifera HOM05D000005 ORTHO05D000012 3.0e-18 97.4 130 41.5
Nn8g41080 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.1e-17 95.5 133 34.6
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.5e-17 95.1 240 30.4
CSS0000854 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.5e-17 94.4 221 31.2
Rhsim13G0019700 Rhododendron simsii HOM05D011829 ORTHO05D011279 2.5e-17 94.4 223 29.1
CSS0014612 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.6e-17 93.2 269 25.7
Dinv27194 Davidia involucrata HOM05D009617 ORTHO05D010313 7.4e-17 92.8 128 35.9
Nn1g09534 Nelumbo nucifera HOM05D000005 ORTHO05D000012 2.8e-16 90.9 231 28.6
CSS0040509 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.4e-15 87.8 168 33.9
Sed0018635 Sechium edule HOM05D000005 ORTHO05D000012 4.0e-15 87.0 294 24.1
Cpa.g.sc4.91 Carica papaya HOM05D000005 ORTHO05D000012 6.9e-15 86.3 262 26.3
CSS0032356 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.2e-14 85.5 274 24.5
Nn1g08209 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.2e-14 85.5 282 27.7
Peaxi162Scf01000g00019 Petunia axillaris HOM05D000005 ORTHO05D000012 2.0e-14 84.7 238 27.7
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.6e-14 84.3 233 29.6
Peaxi162Scf00194g01013 Petunia axillaris HOM05D000005 ORTHO05D000012 3.4e-14 84.0 238 27.7
Solyc01g102880.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.4e-14 84.0 249 27.3
Rhsim13G0019500 Rhododendron simsii HOM05D011829 ORTHO05D011279 5.8e-14 83.2 219 27.4
vmacro05380 Vaccinium macrocarpon HOM05D011829 ORTHO05D011279 5.8e-14 83.2 219 30.1
MD17G1277700 Malus domestica HOM05D000005 ORTHO05D000012 7.6e-14 82.8 177 36.2
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 7.6e-14 82.8 239 27.6
Dinv38459 Davidia involucrata HOM05D000005 ORTHO05D000012 9.9e-14 82.4 246 29.7
QL93p2016_0075 Quercus lobata HOM05D000005 ORTHO05D000012 9.9e-14 82.4 227 27.8
Actinidia00144 Actinidia chinensis HOM05D000005 ORTHO05D000012 1.3e-13 82.0 250 30.4
Sopen01g045300 Solanum pennellii HOM05D000005 ORTHO05D000012 2.2e-13 81.3 239 27.6
Dinv29687 Davidia involucrata HOM05D000005 ORTHO05D000012 2.9e-13 80.9 163 34.4
Dinv38462 Davidia involucrata HOM05D000005 ORTHO05D000012 3.8e-13 80.5 151 38.4
vmacro01620 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 3.8e-13 80.5 200 29.0
vmacro23186 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 3.8e-13 80.5 200 29.0
RcHm_v2.0_Chr4g0412381 Rosa chinensis HOM05D000005 ORTHO05D000012 8.4e-13 79.3 243 25.1
PGSC0003DMG400013098 Solanum tuberosum HOM05D000005 ORTHO05D000012 8.4e-13 79.3 239 27.6
TWI53G0929 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.1e-12 79.0 229 26.6
TWI23G0009 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.4e-12 78.6 264 26.5
CSS0014375 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.9e-12 78.2 257 28.0
Nitab4.5_0006159g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.4e-12 77.8 236 28.4
Prupe.3G009700 Prunus persica HOM05D000005 ORTHO05D000012 2.4e-12 77.8 174 34.5
Dinv38457 Davidia involucrata HOM05D010983 ORTHO05D000012 4.2e-12 77.0 148 34.5
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-12 77.0 170 34.7
MELO3C030973.2 Cucumis melo HOM05D000005 ORTHO05D000012 5.5e-12 76.6 166 29.5
CSS0002987 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 7.1e-12 76.3 240 26.7
Dinv12505 Davidia involucrata HOM05D020723 ORTHO05D022460 7.1e-12 76.3 181 27.6
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 7.1e-12 76.3 256 27.7
Rhsim13G0019900 Rhododendron simsii HOM05D011829 ORTHO05D011279 9.3e-12 75.9 217 27.6
Nn8g40975 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.2e-11 75.5 233 27.9
Cfa023553 Carpinus fangiana HOM05D016510 ORTHO05D014169 2.1e-11 74.7 211 31.8
Dinv00401 Davidia involucrata HOM05D000005 ORTHO05D000012 4.6e-11 73.6 149 34.2
Dinv29690 Davidia involucrata HOM05D000005 ORTHO05D000012 4.6e-11 73.6 149 34.2
FvH4_2g20310 Fragaria vesca HOM05D000005 ORTHO05D000012 4.6e-11 73.6 167 30.5
Dinv38447 Davidia involucrata HOM05D000005 ORTHO05D000012 6.0e-11 73.2 224 29.0
CAN.G1372.3 Capsicum annuum HOM05D000005 ORTHO05D000012 7.9e-11 72.8 240 26.7
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 7.9e-11 72.8 297 26.9
TWI36G1442 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 7.9e-11 72.8 249 27.7
Sopen01g045290 Solanum pennellii HOM05D000005 ORTHO05D000012 1.8e-10 71.6 157 29.9
Duzib212G0801 Durio zibethinus HOM05D000005 ORTHO05D000012 3.0e-10 70.9 237 27.0
Lj3C725T19 Lonicera japonica HOM05D000005 ORTHO05D000012 3.9e-10 70.5 221 27.1
Dinv38448 Davidia involucrata HOM05D000005 ORTHO05D000012 6.7e-10 69.7 157 32.5
Actinidia38825 Actinidia chinensis HOM05D000005 ORTHO05D000012 8.7e-10 69.3 229 27.5
COL.COLO4_20241 Corchorus olitorius HOM05D020723 ORTHO05D022460 8.7e-10 69.3 137 32.1
Duzib212G0049 Durio zibethinus HOM05D000005 ORTHO05D000012 1.5e-09 68.6 237 27.8
Duzib212G0595 Durio zibethinus HOM05D000005 ORTHO05D000012 1.5e-09 68.6 235 26.4
Rhsim13G0019800 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.5e-09 68.6 185 24.3
RcHm_v2.0_Chr4g0405381 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-09 68.6 161 31.7
RcHm_v2.0_Chr6g0286441 Rosa chinensis HOM05D000005 ORTHO05D022599 1.5e-09 68.6 162 32.1
RcHm_v2.0_Chr7g0230971 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-09 68.2 260 28.8
MD05G1152200 Malus domestica HOM05D000005 ORTHO05D000012 3.3e-09 67.4 138 34.8
RcHm_v2.0_Chr7g0241291 Rosa chinensis HOM05D000005 ORTHO05D000012 4.3e-09 67.0 258 26.7
Dinv38451 Davidia involucrata HOM05D000005 ORTHO05D000012 5.6e-09 66.6 149 32.9
Duzib212G0923 Durio zibethinus HOM05D000005 ORTHO05D000012 5.6e-09 66.6 139 30.9
RcHm_v2.0_Chr2g0101061 Rosa chinensis HOM05D000005 ORTHO05D000012 5.6e-09 66.6 170 30.6
CSS0019233 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000294 7.4e-09 66.2 230 25.7
Nn8g40945 Nelumbo nucifera HOM05D000005 ORTHO05D000012 7.4e-09 66.2 219 26.5
Rhsim13G0019400 Rhododendron simsii HOM05D011829 ORTHO05D011279 7.4e-09 66.2 131 29.8
CSS0037441 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.3e-08 65.5 127 33.1
Dinv38455 Davidia involucrata HOM05D000005 ORTHO05D000012 1.3e-08 65.5 138 29.7
MD12G1193200 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-08 65.1 134 32.1
CAN.G1372.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.1e-08 64.7 142 27.5
CAN.G1372.2 Capsicum annuum HOM05D000005 ORTHO05D000012 2.1e-08 64.7 150 29.3
Medtr6g015665 Medicago truncatula HOM05D000005 ORTHO05D000012 2.1e-08 64.7 147 28.6
Rhsim08G0165200 Rhododendron simsii HOM05D011829 ORTHO05D011279 2.1e-08 64.7 247 25.1
vmacro13554 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 2.1e-08 64.7 151 27.8
MD02G1039200 Malus domestica HOM05D000005 ORTHO05D000012 2.8e-08 64.3 229 25.3
Nitab4.5_0006159g0050 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.8e-08 64.3 142 31.7
FvH4_5g32990 Fragaria vesca HOM05D000005 ORTHO05D000012 3.7e-08 63.9 258 26.4
FAN27G2507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.7e-08 63.9 181 27.6
Prupe.2G126700 Prunus persica HOM05D000005 ORTHO05D000012 3.7e-08 63.9 124 32.3
Prupe.6G132100 Prunus persica HOM05D000005 ORTHO05D000012 3.7e-08 63.9 137 29.9
Medtr6g015455 Medicago truncatula HOM05D000005 ORTHO05D000012 4.8e-08 63.5 212 28.8
Prupe.2G126800 Prunus persica HOM05D000005 ORTHO05D000012 4.8e-08 63.5 134 32.1
Peaxi162Scf00000g00052 Petunia axillaris HOM05D000005 ORTHO05D000012 6.2e-08 63.2 235 26.4
PGSC0003DMG400018216 Solanum tuberosum HOM05D000005 ORTHO05D000012 6.2e-08 63.2 150 29.3
Thecc.05G210400 Theobroma cacao HOM05D000005 ORTHO05D000012 6.2e-08 63.2 179 26.3
Dinv00400 Davidia involucrata HOM05D000005 ORTHO05D000012 8.2e-08 62.8 137 34.3
ECA240G0836 Erigeron canadensis HOM05D000005 ORTHO05D000012 8.2e-08 62.8 133 33.1
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 8.2e-08 62.8 126 31.0
MD07G1112300 Malus domestica HOM05D000005 ORTHO05D000012 8.2e-08 62.8 157 28.7
Prupe.2G121000 Prunus persica HOM05D000005 ORTHO05D000012 8.2e-08 62.8 129 31.8
CSS0008929 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.1e-07 62.4 145 30.3
MD04G1011700 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-07 62.4 233 24.5
CSS0015970 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.4e-07 62.0 145 30.3
CAN.G1379.4 Capsicum annuum HOM05D000005 ORTHO05D000012 1.4e-07 62.0 145 29.7
Prupe.8G184900 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-07 62.0 139 30.2
RcHm_v2.0_Chr6g0281981 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-07 62.0 222 28.8
TWI53G0533 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.4e-07 62.0 303 25.7
Dinv38458 Davidia involucrata HOM05D000005 ORTHO05D000012 1.8e-07 61.6 168 27.4
MD02G1040900 Malus domestica HOM05D000005 ORTHO05D000012 1.8e-07 61.6 241 25.7
Prupe.2G126900 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-07 61.6 129 31.0
Lj5A790T7 Lonicera japonica HOM05D011560 ORTHO05D000012 2.4e-07 61.2 149 25.5
Prupe.2G126400 Prunus persica HOM05D000005 ORTHO05D000012 2.4e-07 61.2 129 31.8
QL10p051095 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-07 61.2 288 22.6
Sabra19G0007100 Salix brachista HOM05D009213 ORTHO05D010313 2.4e-07 61.2 185 26.5
TPR.G4302 Trifolium pratense HOM05D000005 ORTHO05D000012 2.4e-07 61.2 164 25.6
Duzib212G0033 Durio zibethinus HOM05D000005 ORTHO05D000012 3.1e-07 60.8 186 26.3
FAN18G0651 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.0e-07 60.5 252 25.8
CSS0022340 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.3e-07 60.1 150 28.7
FvH4_5g32970 Fragaria vesca HOM05D000005 ORTHO05D000012 5.3e-07 60.1 252 25.8
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 6.9e-07 59.7 133 30.8
FAN04G1780 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.9e-07 59.7 221 25.8
Lj3g0009889 Lotus japonicus HOM05D000005 ORTHO05D000012 6.9e-07 59.7 278 27.3
arahy.Tifrunner.gnm1.ann1.797BBR Arachis hypogaea HOM05D000005 ORTHO05D000012 9.0e-07 59.3 149 27.5
Duzib268G1112 Durio zibethinus HOM05D000005 ORTHO05D000012 9.0e-07 59.3 132 31.1
Lj5C789T4 Lonicera japonica HOM05D011560 ORTHO05D000012 9.0e-07 59.3 164 26.2
Prupe.2G126600 Prunus persica HOM05D000005 ORTHO05D000012 9.0e-07 59.3 129 31.0
Sabra19G0008700 Salix brachista HOM05D009213 ORTHO05D010313 9.0e-07 59.3 180 25.6
CSS0050220 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.2e-06 58.9 141 29.8
Cc00_g19200 Coffea canephora HOM05D000005 ORTHO05D000012 1.2e-06 58.9 238 25.6
RcHm_v2.0_Chr1g0375911 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-06 58.9 166 28.9
MD08G1203600 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-06 58.5 168 26.8
Rhsim13G0019600 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.5e-06 58.5 140 30.7
Solyc02g032650.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.5e-06 58.5 163 30.1
CSS0031517 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.0e-06 58.2 133 28.6
Cc00_g15130 Coffea canephora HOM05D000005 ORTHO05D000012 2.0e-06 58.2 127 30.7
Lj5C825T1 Lonicera japonica HOM05D011560 ORTHO05D000012 2.0e-06 58.2 164 26.2
Manes.12G149700 Manihot esculenta HOM05D000005 ORTHO05D000012 2.0e-06 58.2 222 27.5
RcHm_v2.0_Chr1g0372541 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-06 58.2 133 33.1
vmacro01858 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 2.6e-06 57.8 138 28.3
arahy.Tifrunner.gnm1.ann1.3DBB45 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.4e-06 57.4 142 27.5
arahy.Tifrunner.gnm1.ann1.IFV7W8 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.4e-06 57.4 149 27.5
arahy.Tifrunner.gnm1.ann1.P6IVR8 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.4e-06 57.4 142 27.5
Lj5P824T16 Lonicera japonica HOM05D011560 ORTHO05D000012 3.4e-06 57.4 149 24.8
Nitab4.5_0001085g0160 Nicotiana tabacum HOM05D000005 ORTHO05D000012 3.4e-06 57.4 140 26.4
Potri.003G084366 Populus trichocarpa HOM05D009213 ORTHO05D010313 3.4e-06 57.4 145 26.9
Prupe.2G126300 Prunus persica HOM05D000005 ORTHO05D000012 3.4e-06 57.4 122 31.1
CSS0034467 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.5e-06 57.0 166 27.7
Medtr5g047530 Medicago truncatula HOM05D000005 ORTHO05D000012 4.5e-06 57.0 159 29.6
Sabra19G0046000 Salix brachista HOM05D009213 ORTHO05D010313 4.5e-06 57.0 181 26.5
Sabra19G0046200 Salix brachista HOM05D009213 ORTHO05D010313 4.5e-06 57.0 186 25.3
Thecc.05G210700 Theobroma cacao HOM05D000005 ORTHO05D000012 4.5e-06 57.0 168 24.4
Thecc.06G027800 Theobroma cacao HOM05D000005 ORTHO05D000012 4.5e-06 57.0 138 27.5
Cc08_g06820 Coffea canephora HOM05D000005 ORTHO05D000012 5.8e-06 56.6 127 30.7
FAN19G1590 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.8e-06 56.6 231 24.2
Prupe.2G126100 Prunus persica HOM05D000005 ORTHO05D000012 5.8e-06 56.6 247 25.1
Sabra19G0008300 Salix brachista HOM05D009213 ORTHO05D010313 5.8e-06 56.6 179 26.8
CSS0004944 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 7.6e-06 56.2 77 33.8
CSS0007619 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 7.6e-06 56.2 123 28.5
Lj5A794T35 Lonicera japonica HOM05D011560 ORTHO05D000012 7.6e-06 56.2 167 26.9
MD11G1112400 Malus domestica HOM05D000005 ORTHO05D000012 7.6e-06 56.2 139 27.3
arahy.Tifrunner.gnm1.ann1.G8I87E Arachis hypogaea HOM05D000005 ORTHO05D000012 1.0e-05 55.8 235 23.4
Ciclev10019444m.g Citrus clementina HOM05D000005 ORTHO05D019027 1.0e-05 55.8 100 29.0
FvH4_2g17330 Fragaria vesca HOM05D000005 ORTHO05D000012 1.0e-05 55.8 145 29.7


User provided reference genes

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