Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.3e-214 749.6 407 100.0
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.7e-180 635.6 359 83.3
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 4.6e-180 634.8 359 83.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.1e-173 613.6 359 81.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.6e-172 608.2 361 80.1
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 5.0e-171 604.7 361 79.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.9e-170 602.8 359 78.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 9.5e-170 600.5 361 78.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.2e-169 600.1 360 78.6
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.8e-168 596.3 361 77.6
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 2.3e-168 595.9 359 78.3
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.0e-168 595.1 360 78.3
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 5.2e-168 594.7 362 77.6
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 8.9e-168 594.0 360 78.9
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.5e-167 593.2 361 77.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.4e-167 592.0 349 79.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 4.4e-167 591.7 345 81.2
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 9.9e-167 590.5 360 77.5
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.7e-166 588.6 346 79.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.4e-166 587.8 363 76.3
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.0e-163 580.5 363 75.2
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.7e-163 579.7 383 73.6
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 6.6e-163 577.8 362 75.7
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 8.6e-163 577.4 362 76.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 8.6e-163 577.4 363 74.9
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.5e-162 576.6 383 72.1
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.5e-162 576.6 363 76.0
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.5e-162 576.6 359 76.6
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.5e-162 575.9 361 75.9
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.5e-162 575.9 363 74.9
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.6e-162 574.7 358 79.1
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.6e-162 574.7 358 79.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.2e-161 573.5 361 75.9
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.2e-161 573.5 360 74.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-161 573.5 363 74.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.1e-161 572.8 364 74.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.8e-161 572.4 383 71.5
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.6e-161 572.0 362 74.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 4.7e-161 571.6 358 75.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.1e-161 570.9 362 74.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.1e-161 570.9 362 75.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.4e-160 570.1 359 74.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.4e-160 569.3 356 76.7
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.1e-160 568.9 359 76.0
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.1e-160 568.9 359 76.0
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.8e-160 567.8 360 75.8
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-159 565.5 348 77.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 7.6e-159 564.3 346 76.9
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-158 563.5 362 74.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-158 562.8 362 74.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.9e-158 562.4 345 77.1
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 8.4e-158 560.8 361 74.2
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-157 560.5 362 74.0
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.4e-157 560.1 402 68.9
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 9.2e-157 557.4 359 74.1
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.2e-156 557.0 360 74.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.2e-156 557.0 360 74.2
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.2e-156 557.0 361 73.1
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.2e-156 557.0 360 74.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.2e-156 557.0 361 73.1
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.1e-156 556.2 360 74.4
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.7e-155 553.1 346 75.7
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.0e-155 552.4 339 76.7
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 6.6e-155 551.2 363 71.9
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.5e-154 550.1 359 72.4
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.9e-154 549.7 358 73.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.3e-154 548.9 359 71.9
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 7.3e-154 547.7 326 77.0
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 9.6e-154 547.4 373 70.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.6e-153 546.6 358 71.8
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.6e-153 545.4 345 76.2
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.7e-153 545.0 353 73.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 6.2e-153 544.7 358 71.8
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.4e-152 543.5 357 72.0
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.4e-152 543.5 360 70.8
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.4e-152 542.7 356 71.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.4e-152 542.7 359 70.5
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.0e-152 542.0 333 75.4
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.5e-151 540.0 359 70.8
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.0e-151 539.7 364 71.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.6e-151 539.3 359 71.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 4.4e-151 538.5 361 72.6
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.8e-151 538.1 361 72.3
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 7.6e-151 537.7 360 71.7
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 7.6e-151 537.7 359 71.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 9.9e-151 537.3 370 67.8
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.3e-150 537.0 345 74.8
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.2e-150 536.2 346 75.4
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 2.2e-150 536.2 359 71.3
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.2e-149 531.9 359 69.1
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.3e-149 530.8 298 82.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-148 530.4 361 71.2
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 6.0e-148 528.1 362 68.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 3.9e-147 525.4 362 73.5
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.9e-146 523.1 298 81.9
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.5e-146 522.7 359 68.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 9.6e-146 520.8 341 72.7
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.6e-145 520.0 359 72.1
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.6e-145 520.0 347 72.3
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.8e-145 518.5 360 68.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 8.1e-145 517.7 360 68.9
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.8e-144 516.5 361 68.4
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.1e-144 515.8 361 66.8
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 2.0e-143 513.1 365 66.8
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.3e-142 510.4 336 72.6
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.4e-141 505.0 358 70.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.2e-140 503.8 366 68.0
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-140 503.4 362 66.0
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 2.3e-139 499.6 357 66.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.3e-139 499.6 364 66.2
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.8e-136 490.0 343 67.6
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.8e-134 482.3 358 64.0
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.4e-134 481.5 366 64.5
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.0e-128 462.2 352 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 5.3e-128 461.8 340 63.8
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.8e-126 455.7 357 63.6
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.9e-122 443.4 361 61.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 5.7e-122 441.8 298 67.4
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 7.4e-122 441.4 368 60.3
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 6.9e-120 434.9 367 58.9
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-119 434.1 285 74.0
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.5e-119 433.7 342 63.2
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.5e-119 433.7 298 67.4
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.5e-118 427.9 298 65.8
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.1e-117 427.6 231 83.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.1e-112 411.0 349 58.2
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.0e-111 406.8 362 56.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.6e-111 406.4 298 67.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 8.5e-110 401.4 312 59.9
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 6.3e-105 385.2 340 54.1
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.1e-104 382.9 298 62.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.7e-103 378.3 198 87.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.6e-100 369.4 206 83.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 3.5e-95 352.8 198 80.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 5.2e-91 339.0 219 73.5
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 8.3e-89 331.6 232 70.3
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-88 330.9 177 86.4
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.2e-85 319.7 231 66.7
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.8e-82 308.1 259 58.3
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.5e-77 293.5 229 64.6
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.6e-76 290.8 397 40.3
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.1e-72 278.1 302 45.4
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.1e-72 276.2 224 58.0
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 5.4e-72 275.8 343 42.6
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 6.6e-70 268.9 221 61.5
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 5.8e-58 229.2 295 41.0
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.2e-57 227.3 195 57.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 7.5e-50 202.2 333 35.4
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.4e-48 196.1 125 76.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.2e-36 156.0 148 56.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.1e-35 155.2 105 69.5
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.5e-29 134.0 117 58.1
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.9e-25 120.6 65 83.1
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.8e-20 104.0 56 80.4
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 6.7e-06 56.2 43 65.1


User provided reference genes

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