Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.1e-164 581.6 361 100.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 4.4e-41 172.9 128 66.4
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 3.4e-38 163.3 174 52.9
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.9e-38 162.5 300 41.3
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.7e-37 161.0 204 48.5
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.5e-36 157.1 129 62.8
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.1e-35 154.1 123 63.4
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 6.1e-35 152.5 165 53.9
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.4e-34 151.4 189 49.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.4e-34 151.4 141 56.7
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-34 151.0 189 48.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.0e-34 150.2 123 61.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.9e-34 149.8 195 47.7
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.9e-34 149.8 190 48.4
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 5.2e-34 149.4 167 53.9
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-33 147.9 189 48.1
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.0e-33 147.5 177 50.3
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.6e-33 147.1 165 53.9
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.7e-33 146.0 227 46.7
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.4e-33 145.6 224 44.2
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.7e-32 144.4 218 45.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.7e-32 144.4 184 50.0
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 8.2e-32 142.1 126 56.3
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.1e-31 141.7 225 44.9
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.4e-31 141.4 226 44.7
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-31 141.0 135 56.3
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.1e-31 139.8 119 58.8
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 5.3e-31 139.4 141 57.4
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 7.0e-31 139.0 129 55.8
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 9.1e-31 138.7 158 51.3
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 9.1e-31 138.7 183 43.2
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.6e-30 137.1 198 43.9
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.5e-30 136.3 196 44.4
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 7.7e-30 135.6 212 43.4
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.7e-29 134.4 152 52.6
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.7e-29 134.4 159 49.7
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.9e-29 133.7 131 57.3
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.8e-29 133.3 150 50.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 8.5e-29 132.1 176 47.7
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.9e-28 131.0 120 56.7
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 2.5e-28 130.6 158 47.5
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 4.2e-28 129.8 133 54.9
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 4.2e-28 129.8 146 56.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 9.4e-28 128.6 130 58.5
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-27 128.3 175 48.6
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.2e-27 128.3 175 48.6
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.1e-27 127.5 148 48.6
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.1e-27 127.5 161 48.4
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.7e-27 127.1 165 49.1
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.6e-27 126.7 118 55.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 3.6e-27 126.7 159 44.7
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 3.6e-27 126.7 94 64.9
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 4.7e-27 126.3 112 58.0
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.1e-27 125.9 251 39.8
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 6.1e-27 125.9 167 49.1
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 8.0e-27 125.6 150 49.3
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-26 124.8 176 47.7
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.4e-26 124.8 176 47.7
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 3.0e-26 123.6 167 47.3
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.2e-25 121.7 184 42.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-25 121.3 126 51.6
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 2.0e-25 120.9 158 47.5
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.0e-25 120.9 126 51.6
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.3e-25 120.2 128 52.3
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 3.3e-25 120.2 132 48.5
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 5.7e-25 119.4 115 53.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.7e-25 118.6 119 54.6
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.2e-24 117.5 119 51.3
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.7e-24 116.7 115 51.3
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.8e-24 116.3 90 60.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 4.8e-24 116.3 156 47.4
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.4e-23 114.8 121 45.5
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.4e-23 114.8 167 42.5
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.4e-23 114.0 176 43.2
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.1e-23 113.6 186 45.2
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.1e-23 113.6 119 52.1
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 4.1e-23 113.2 79 69.6
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 4.1e-23 113.2 79 69.6
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 9.1e-23 112.1 137 45.3
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 9.1e-23 112.1 155 41.9
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.2e-22 111.7 161 49.7
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.6e-22 111.3 157 46.5
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.5e-22 110.2 162 40.7
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 3.5e-22 110.2 142 44.4
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 5.9e-22 109.4 63 76.2
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 7.7e-22 109.0 163 41.7
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.0e-21 108.6 157 43.3
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-21 108.2 186 44.1
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.7e-21 107.8 146 46.6
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 8.5e-21 105.5 237 38.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.1e-20 105.1 138 47.1
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 5.5e-20 102.8 97 55.7
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 9.4e-20 102.1 84 56.0
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.2e-19 101.7 74 59.5
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-19 101.7 163 38.7
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.6e-19 101.3 190 39.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.6e-19 101.3 175 38.9
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 2.7e-19 100.5 114 49.1
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 4.7e-19 99.8 56 76.8
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 6.1e-19 99.4 185 42.2
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.1e-19 99.4 163 38.0
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 8.0e-19 99.0 123 42.3
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.3e-18 97.4 163 37.4
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 2.3e-18 97.4 120 48.3
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 3.0e-18 97.1 141 41.1
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.0e-18 97.1 199 37.7
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 3.0e-18 97.1 179 41.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 4.0e-18 96.7 110 47.3
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 5.2e-18 96.3 61 68.9
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-17 95.1 124 41.9
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.5e-17 94.7 117 45.3
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-17 94.7 116 44.8
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.4e-17 93.6 124 41.1
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.8e-17 92.0 162 41.4
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.8e-17 92.0 162 41.4
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.7e-16 91.3 118 50.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.2e-16 90.9 123 45.5
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.7e-16 90.1 157 37.6
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 4.8e-16 89.7 117 41.9
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 8.3e-16 89.0 117 41.9
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.1e-15 88.6 191 36.6
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-15 88.2 254 31.9
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.8e-15 87.8 100 53.0
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.8e-15 87.8 100 53.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 2.4e-15 87.4 198 35.9
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 4.1e-15 86.7 183 35.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 5.4e-15 86.3 160 40.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-14 85.1 254 30.7
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.6e-14 84.7 173 38.7
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.0e-13 82.0 115 42.6
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.3e-13 81.6 116 41.4
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.3e-13 81.6 94 54.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 2.9e-13 80.5 151 38.4
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 6.5e-13 79.3 92 51.1
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.2e-12 76.6 73 53.4
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 2.8e-11 73.9 204 34.8
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 6.1e-11 72.8 46 65.2
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 4.0e-10 70.1 127 37.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 8.8e-10 68.9 171 36.8
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 8.8e-10 68.9 171 36.8
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 2.6e-09 67.4 81 55.6
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 3.4e-09 67.0 168 36.9
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 3.4e-09 67.0 89 42.7
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 5.7e-09 66.2 167 31.1
VMungo1309G1791 Vigna mungo HOM05D016564 ORTHO05D019006 9.8e-09 65.5 139 36.0
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.3e-08 65.1 155 32.9
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 2.8e-08 63.9 133 34.6
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.4e-07 61.6 43 58.1
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 1.8e-07 61.2 272 30.9
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 1.8e-07 61.2 118 34.7
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.8e-07 61.2 114 36.8
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.4e-07 60.8 119 37.8
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 2.4e-07 60.8 114 36.0
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 3.1e-07 60.5 116 37.1
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 3.1e-07 60.5 42 64.3
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 3.1e-07 60.5 114 36.0
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 9.2e-07 58.9 133 33.8
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 9.2e-07 58.9 115 34.8
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 1.2e-06 58.5 129 32.6
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.6e-06 58.2 143 33.6
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.6e-06 58.2 169 32.0
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 1.6e-06 58.2 174 30.5
THA.LOC104799551 Tarenaya hassleriana HOM05D004622 ORTHO05D005431 1.6e-06 58.2 114 31.6
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 2.0e-06 57.8 156 32.1
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 2.0e-06 57.8 141 30.5
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 2.7e-06 57.4 118 30.5
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 2.7e-06 57.4 80 36.2
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 4.5e-06 56.6 125 35.2
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 4.5e-06 56.6 148 33.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 4.5e-06 56.6 162 32.7
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 4.5e-06 56.6 65 41.5
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 4.5e-06 56.6 115 35.7
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 4.5e-06 56.6 122 32.8
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 4.5e-06 56.6 145 31.0
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 5.9e-06 56.2 75 37.3
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 5.9e-06 56.2 171 32.7
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 5.9e-06 56.2 75 36.0
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 5.9e-06 56.2 75 36.0
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 7.8e-06 55.8 177 32.2


User provided reference genes

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