Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.1e-173 611.3 313 100.0
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 9.6e-45 184.9 323 46.1
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 4.2e-32 142.9 305 37.4
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 8.7e-30 135.2 317 36.9
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.6e-29 132.5 341 35.2
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 9.6e-29 131.7 363 36.1
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-28 131.3 368 35.1
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.7e-28 129.8 361 34.3
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.2e-28 128.6 350 34.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.4e-27 127.9 349 35.5
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.4e-27 127.9 336 37.2
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-27 127.1 339 36.0
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 3.4e-26 123.2 265 42.3
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.1e-24 118.2 216 40.3
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.9e-24 117.5 252 38.5
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.5e-24 117.1 294 36.1
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.7e-23 113.6 267 37.5
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.7e-23 113.6 254 36.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.6e-23 112.8 305 35.1
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-22 110.5 255 35.7
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.9e-21 107.5 267 39.3
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 3.7e-20 103.2 263 37.3
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 3.7e-20 103.2 263 37.3
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.7e-17 94.4 233 35.6
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 2.7e-15 87.0 232 32.8
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.4e-14 84.7 343 30.0
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 1.8e-14 84.3 160 39.4
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.8e-14 84.3 172 37.8
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.3e-14 84.0 153 39.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.0e-14 83.6 139 43.2
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.1e-14 82.8 180 37.8
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 6.7e-14 82.4 180 37.2
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 8.8e-14 82.0 125 44.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.8e-14 82.0 180 37.8
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.3e-13 80.1 145 40.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 9.7e-13 78.6 192 34.4
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 2.2e-12 77.4 125 41.6
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.2e-12 77.4 132 40.9
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.7e-12 76.6 214 34.6
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.7e-12 76.6 205 36.1
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.7e-12 76.6 150 41.3
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 3.7e-12 76.6 150 42.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-12 76.6 224 33.0
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.7e-12 76.6 121 42.1
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 6.3e-12 75.9 133 40.6
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 8.2e-12 75.5 342 28.7
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 8.2e-12 75.5 203 33.5
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 8.2e-12 75.5 183 36.6
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.1e-11 75.1 209 35.4
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.1e-11 75.1 165 38.8
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.1e-11 75.1 205 33.7
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.1e-11 75.1 114 38.6
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-11 74.3 191 36.1
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.8e-11 74.3 189 36.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.8e-11 74.3 189 36.5
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 2.4e-11 73.9 211 32.2
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.1e-11 73.6 154 38.3
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 3.1e-11 73.6 172 37.8
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.1e-11 73.6 203 33.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 4.1e-11 73.2 154 37.0
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.1e-11 73.2 77 50.6
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.1e-11 73.2 77 50.6
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.1e-11 73.2 134 38.8
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 5.3e-11 72.8 129 41.9
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 6.9e-11 72.4 211 34.1
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 6.9e-11 72.4 211 34.1
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.9e-11 72.4 181 35.9
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 9.1e-11 72.0 102 42.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.5e-10 71.2 172 33.7
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-10 71.2 201 34.3
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 3.4e-10 70.1 205 32.2
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 4.5e-10 69.7 140 37.1
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.5e-10 69.7 214 32.2
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 5.9e-10 69.3 172 36.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 5.9e-10 69.3 204 34.8
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 7.7e-10 68.9 149 38.3
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.0e-09 68.6 118 40.7
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.0e-09 68.6 136 39.0
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.7e-09 67.8 75 49.3
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.7e-09 67.8 113 38.9
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.2e-09 67.4 205 37.1
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.9e-09 67.0 181 32.6
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 3.8e-09 66.6 129 36.4
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 5.0e-09 66.2 115 38.3
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 5.0e-09 66.2 70 42.9
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 5.0e-09 66.2 70 42.9
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 5.0e-09 66.2 242 31.4
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 6.5e-09 65.9 64 53.1
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 6.5e-09 65.9 141 36.9
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 8.5e-09 65.5 107 39.3
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 8.5e-09 65.5 48 62.5
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.1e-08 65.1 154 31.2
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.1e-08 65.1 95 43.2
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.4e-08 64.7 132 37.1
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.9e-08 64.3 119 39.5
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.2e-08 63.5 72 44.4
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 4.2e-08 63.2 165 32.1
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.2e-08 63.2 114 32.5
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 5.5e-08 62.8 158 34.2
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 7.2e-08 62.4 155 34.8
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.2e-08 62.4 150 35.3
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 7.2e-08 62.4 209 31.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 7.2e-08 62.4 85 43.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 7.2e-08 62.4 145 33.1
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 9.4e-08 62.0 69 42.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 9.4e-08 62.0 84 42.9
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-07 61.6 171 33.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.2e-07 61.6 99 38.4
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.6e-07 61.2 161 34.2
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.6e-07 61.2 98 32.7
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.1e-07 60.8 122 35.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.7e-07 60.5 47 55.3
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.7e-07 60.5 129 32.6
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.7e-07 60.5 99 38.4
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 6.1e-07 59.3 141 34.8
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.1e-07 59.3 97 38.1
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.1e-07 59.3 128 35.2
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 6.1e-07 59.3 101 39.6
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 6.1e-07 59.3 55 54.5
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.9e-07 58.9 132 34.1
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-06 58.5 128 35.2
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 1.0e-06 58.5 136 36.8
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.4e-06 58.2 114 36.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.3e-06 57.4 133 36.1
CAN.G689.16 Capsicum annuum HOM05D004520 ORTHO05D005520 2.3e-06 57.4 69 40.6
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.3e-06 57.4 141 34.0
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.3e-06 57.4 105 31.4
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.0e-06 57.0 54 53.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.0e-06 57.0 97 37.1
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.9e-06 56.6 74 43.2
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.9e-06 56.6 57 49.1
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 3.9e-06 56.6 112 35.7
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.1e-06 56.2 138 34.8
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 6.7e-06 55.8 44 56.8
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.8e-06 55.5 173 33.5
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 8.8e-06 55.5 61 45.9
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 8.8e-06 55.5 188 29.3


User provided reference genes

Program Settings