Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 1.9e-273 945.3 479 100.0
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 3.2e-233 811.6 479 86.0
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 3.1e-212 741.9 478 78.9
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 3.1e-212 741.9 478 79.5
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.0e-210 736.9 476 81.7
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.0e-210 736.9 478 79.1
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 5.0e-210 734.6 478 79.1
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 7.2e-209 730.7 480 77.9
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.2e-208 729.9 476 77.3
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 1.2e-208 729.9 476 77.5
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 3.6e-208 728.4 478 77.6
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.3e-207 725.7 472 79.0
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 7.4e-206 720.7 476 76.7
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 6.3e-205 717.6 476 77.1
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 8.2e-205 717.2 478 77.4
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.5e-203 713.0 476 75.6
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 2.6e-203 712.2 470 76.6
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 4.5e-203 711.4 480 76.5
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 4.5e-203 711.4 476 76.5
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 4.5e-203 711.4 472 76.5
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 4.5e-203 711.4 477 76.1
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 7.7e-203 710.7 482 75.7
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 1.0e-202 710.3 476 76.1
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.5e-201 706.4 478 75.3
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.9e-201 706.1 480 74.8
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 7.2e-201 704.1 482 75.5
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 2.1e-200 702.6 477 75.7
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 8.0e-200 700.7 476 75.0
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.0e-199 700.3 476 75.0
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 3.0e-199 698.7 474 77.6
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 5.2e-199 698.0 476 74.2
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 2.6e-198 695.7 476 75.0
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.6e-198 695.7 479 73.3
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 3.3e-198 695.3 476 74.6
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.4e-198 694.1 476 73.3
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 2.2e-197 692.6 484 74.4
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.8e-197 692.2 516 70.5
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 3.7e-197 691.8 476 74.2
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 3.7e-197 691.8 476 74.8
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 6.3e-197 691.0 471 79.0
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 5.3e-196 688.0 474 76.2
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 5.9e-195 684.5 478 73.4
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.0e-194 683.7 476 71.8
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 1.7e-194 682.9 476 73.9
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.2e-194 682.6 479 73.1
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 2.9e-194 682.2 477 73.6
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 3.8e-194 681.8 493 71.6
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 6.1e-192 674.5 478 71.1
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 8.0e-192 674.1 479 73.3
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 8.0e-192 674.1 479 73.9
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 1.0e-191 673.7 421 81.2
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.3e-191 672.5 481 71.5
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.2e-190 670.2 477 72.1
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 9.8e-190 667.2 484 69.8
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 1.7e-189 666.4 480 69.8
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 2.2e-189 666.0 484 69.6
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 3.7e-189 665.2 476 71.4
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 3.7e-189 665.2 479 71.4
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 8.3e-189 664.1 484 69.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 9.1e-188 660.6 509 68.0
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.0e-187 659.4 478 71.8
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.5e-187 658.3 477 71.9
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 2.2e-186 656.0 479 69.9
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 3.8e-186 655.2 480 70.0
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 5.0e-186 654.8 479 71.4
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 8.5e-186 654.1 479 69.7
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.1e-185 653.7 478 70.1
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 2.5e-185 652.5 476 70.2
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 2.7e-184 649.0 476 69.5
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 8.0e-184 647.5 476 70.6
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 5.2e-183 644.8 476 70.4
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 7.5e-182 641.0 476 70.6
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.7e-181 639.8 477 70.6
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 4.5e-179 631.7 476 69.5
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 4.5e-179 631.7 476 69.5
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 4.5e-179 631.7 476 69.5
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 4.5e-179 631.7 535 64.3
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 3.8e-178 628.6 476 68.9
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 6.6e-178 627.9 476 69.3
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 1.1e-177 627.1 476 69.1
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 1.2e-176 623.6 419 75.9
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 2.0e-174 616.3 476 67.6
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 7.5e-174 614.4 480 67.7
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 3.5e-171 605.5 470 67.0
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 1.0e-170 604.0 470 66.8
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 2.5e-169 599.4 469 66.3
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 5.6e-169 598.2 487 64.3
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 5.6e-169 598.2 470 66.2
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.6e-168 596.7 422 71.8
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.7e-168 595.1 475 67.6
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 1.2e-166 590.5 478 65.9
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 1.3e-165 587.0 488 64.5
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.3e-165 587.0 479 66.2
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 5.4e-164 581.6 476 66.0
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 7.8e-163 577.8 435 70.3
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.1e-160 569.7 442 68.3
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 2.3e-159 566.2 373 80.2
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 7.5e-158 561.2 378 76.5
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 6.0e-155 551.6 382 73.3
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 8.6e-154 547.7 576 55.0
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.6e-152 543.5 380 72.1
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.2e-150 537.3 483 59.4
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.1e-143 514.2 480 58.5
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 1.5e-142 510.4 338 77.8
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 6.0e-139 498.4 310 81.0
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 3.6e-128 462.6 343 68.5
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 5.5e-124 448.7 808 38.4
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 7.1e-124 448.4 314 73.2
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 2.8e-120 436.4 479 51.8
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 4.2e-116 422.5 377 57.8
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 1.7e-109 400.6 450 51.3
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 7.2e-108 395.2 451 50.8
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.7e-107 393.3 450 50.9
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 2.7e-107 393.3 451 50.3
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.3e-106 390.2 450 50.9
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 2.3e-106 390.2 448 49.3
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 3.7e-104 382.9 470 48.3
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 6.3e-104 382.1 448 49.8
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 1.7e-101 374.0 451 49.0
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 6.5e-101 372.1 443 47.0
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 2.7e-99 366.7 396 52.0
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 4.6e-99 365.9 247 76.1
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 1.0e-98 364.8 368 53.8
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 1.0e-98 364.8 410 49.3
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 3.9e-98 362.8 367 53.4
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.0e-90 338.2 493 42.0
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.4e-87 327.8 228 72.4
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 6.5e-85 318.9 239 68.6
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.6e-83 314.3 448 45.5
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.6e-78 297.7 490 39.4
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.0e-74 283.5 252 61.9
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.7e-62 243.8 309 46.0
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.7e-53 214.5 200 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.7e-48 198.0 441 34.0
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.2e-46 191.8 176 59.7
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 1.6e-46 191.4 202 51.5
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.3e-42 177.6 520 29.8
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 8.1e-35 152.5 101 72.3
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.0e-34 150.2 105 70.5
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 9.9e-17 92.4 88 50.0
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 4.2e-15 87.0 62 72.6
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 3.0e-13 80.9 139 35.3
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 1.4e-07 62.0 371 22.1
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 4.6e-06 57.0 81 38.3


User provided reference genes

Program Settings