Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 2.5e-74 282.0 135 100.0
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 3.0e-72 275.0 135 96.3
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 6.3e-70 267.3 135 93.3
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 6.3e-70 267.3 135 94.1
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.1e-69 266.5 135 92.6
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.4e-69 266.2 135 93.3
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 3.1e-69 265.0 135 91.9
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 4.1e-69 264.6 135 92.6
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 4.1e-69 264.6 135 92.6
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 5.4e-69 264.2 135 92.6
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 5.4e-69 264.2 135 93.3
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 7.0e-69 263.8 135 92.6
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 7.0e-69 263.8 135 91.9
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 7.0e-69 263.8 135 91.9
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 9.2e-69 263.5 135 93.3
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.2e-68 263.1 135 92.6
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.2e-68 263.1 135 91.9
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-68 263.1 135 91.9
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-68 263.1 135 91.9
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-68 263.1 135 91.9
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 1.6e-68 262.7 135 91.9
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 1.6e-68 262.7 135 91.9
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.0e-68 262.3 135 91.9
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.7e-68 261.9 135 90.4
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 3.5e-68 261.5 135 91.9
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 3.5e-68 261.5 135 91.9
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.5e-68 261.2 135 90.4
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 5.9e-68 260.8 135 90.4
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 5.9e-68 260.8 135 91.1
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 5.9e-68 260.8 135 90.4
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 91.9
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.3e-67 259.6 135 91.1
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 2.3e-67 258.8 135 91.1
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.0e-67 257.7 135 89.6
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.0e-67 257.7 135 89.6
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 5.0e-67 257.7 135 89.6
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.1e-66 256.5 135 90.4
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.1e-66 256.5 135 90.4
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.1e-66 256.5 135 88.9
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.5e-66 256.1 135 89.6
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 86.7
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 88.1
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 88.9
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 88.9
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 135 88.9
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 3.3e-66 255.0 135 88.1
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.6e-65 252.7 133 89.5
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.1e-65 252.3 135 88.1
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 4.7e-65 251.1 135 86.7
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.0e-64 250.0 135 85.9
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.0e-64 250.0 135 85.9
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 85.2
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 86.7
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 1.8e-64 249.2 135 88.1
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.3e-64 248.8 135 85.2
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.3e-64 248.8 135 85.2
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.0e-64 248.4 135 84.4
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 3.0e-64 248.4 135 88.1
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 4.0e-64 248.1 133 88.7
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 5.2e-64 247.7 135 84.4
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 5.2e-64 247.7 135 84.4
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 5.2e-64 247.7 135 84.4
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 5.2e-64 247.7 135 84.4
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 6.8e-64 247.3 135 86.7
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 8.9e-64 246.9 135 83.7
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 8.9e-64 246.9 135 85.9
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 1.2e-63 246.5 135 84.4
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.2e-63 246.5 135 84.4
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 1.2e-63 246.5 135 85.2
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 1.2e-63 246.5 135 85.9
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 84.4
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 84.4
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 83.7
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 2.6e-63 245.4 131 89.3
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 84.4
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 4.4e-63 244.6 135 83.0
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 4.4e-63 244.6 135 85.2
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 5.7e-63 244.2 135 84.4
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 7.5e-63 243.8 135 84.4
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 9.8e-63 243.4 135 83.0
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.7e-62 242.7 135 83.0
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 2.2e-62 242.3 135 84.4
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 3.7e-62 241.5 135 85.2
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 6.4e-62 240.7 135 82.2
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 5.4e-61 237.7 124 90.3
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.2e-60 236.5 135 84.4
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 2.7e-60 235.3 124 88.7
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.5e-60 235.0 130 86.9
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 5.9e-60 234.2 135 82.2
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 5.9e-60 234.2 137 81.0
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.7e-59 232.6 129 83.7
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 3.9e-59 231.5 124 87.1
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 3.9e-59 231.5 124 88.7
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.5e-58 229.6 124 87.9
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.5e-58 228.8 124 88.7
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 1.6e-57 226.1 131 80.2
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 1.0e-56 223.4 124 89.5
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 4.0e-56 221.5 119 87.4
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 5.2e-56 221.1 137 73.0
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.5e-55 219.5 133 77.4
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.7e-54 216.1 133 75.9
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 2.9e-54 215.3 133 75.9
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 8.3e-54 213.8 138 73.2
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.1e-53 213.4 133 73.7
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.9e-53 212.6 205 55.1
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.4e-53 212.2 138 74.6
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 3.9e-51 204.9 120 80.8
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 7.3e-50 200.7 136 70.6
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.6e-49 199.5 133 67.7
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 1.1e-48 196.8 130 70.8
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 3.1e-48 195.3 121 78.5
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 9.2e-45 183.7 134 64.2
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.6e-44 183.0 151 60.9
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 4.6e-44 181.4 134 62.7
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 1.9e-42 176.0 125 75.2
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.2e-41 173.3 91 90.1
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 1.8e-40 169.5 128 60.2
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 3.8e-38 161.8 76 96.1
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 5.4e-37 157.9 74 95.9
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 9.2e-37 157.1 74 94.6
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 9.2e-37 157.1 74 94.6
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.3e-35 153.3 92 76.1
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.5e-34 149.8 75 86.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 2.1e-33 146.0 75 82.7
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 4.7e-33 144.8 74 83.8
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 4.7e-33 144.8 74 83.8
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 1.8e-32 142.9 74 85.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.9e-30 134.8 73 80.8
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 6.6e-27 124.4 76 76.3
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.6e-25 119.8 139 51.1
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.7e-22 109.8 129 40.3
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 3.8e-22 108.6 72 75.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 3.3e-18 95.5 50 86.0
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.6e-17 93.2 50 94.0
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 5.3e-16 88.2 163 42.3
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 3.4e-15 85.5 117 43.6
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.4e-13 79.3 125 39.2
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.9e-11 72.0 70 58.6
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 2.5e-10 69.3 36 80.6
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.2e-07 60.5 67 49.3


User provided reference genes

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