Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 2870.1 1458 100.0
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 2264.6 1454 77.6
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 2249.2 1508 75.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 2112.0 1462 73.1
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1780.0 1449 63.6
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1765.0 1452 63.5
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1758.4 1452 62.5
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1749.2 1451 63.3
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1744.2 1454 60.9
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1739.2 1455 60.4
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1732.6 1454 63.1
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1731.8 1454 63.0
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1726.5 1448 61.5
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1717.2 1451 61.4
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1711.4 1454 62.2
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1697.6 1457 61.5
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1692.6 1443 59.1
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1685.2 1536 58.3
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1674.8 1445 60.0
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1671.4 1456 59.5
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1665.2 1447 59.8
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1656.0 1449 59.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1652.9 1457 58.7
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1643.2 1406 60.2
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1633.2 1451 58.4
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1631.7 1450 58.5
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1620.5 1450 58.3
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1609.7 1456 58.5
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1597.0 1449 58.6
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1595.1 1445 58.0
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1590.9 1457 57.3
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1590.5 1448 57.3
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1588.5 1449 56.3
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1583.9 1445 57.5
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1560.0 1454 56.6
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1556.6 1425 57.6
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1548.9 1456 55.6
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1547.7 1470 56.1
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1532.3 1219 63.1
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1527.3 1456 54.9
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1526.9 1525 55.8
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1524.2 1513 53.3
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1496.5 1458 54.4
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1488.0 1453 54.0
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1486.5 1457 54.0
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1474.5 1459 53.4
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1469.9 1445 52.2
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1449.5 1467 52.4
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1448.0 1446 51.7
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1444.5 1436 52.3
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1443.3 1170 62.6
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1439.9 1409 54.8
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1437.2 1471 51.2
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1427.5 1459 51.5
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1426.8 1453 53.4
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1426.0 1467 52.1
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1424.1 1465 51.4
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1422.1 1452 52.0
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1421.0 1216 61.2
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1416.7 1449 51.8
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1416.4 1453 51.4
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1408.7 1450 51.7
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1408.3 1452 52.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1403.3 1451 51.7
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1398.6 1451 51.7
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1397.9 1455 50.4
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1394.0 1453 51.6
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1392.1 1490 51.1
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1390.9 1451 51.6
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1381.3 1451 53.2
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1343.9 1467 49.8
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1338.6 1461 50.0
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1327.8 1429 50.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1319.3 1435 49.8
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1307.0 1109 60.4
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1306.6 1109 60.5
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1304.3 985 65.6
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1294.6 1444 49.0
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1285.0 1489 46.8
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1275.8 1426 49.6
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1245.3 1081 58.7
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1232.2 985 62.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1229.5 1456 47.0
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1130.5 1060 54.1
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1120.1 994 59.4
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1117.1 1477 43.7
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1113.6 1445 43.7
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 6.9e-287 991.5 920 56.5
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 3.5e-267 926.0 1470 38.6
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.2e-238 831.2 743 57.5
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 8.8e-226 788.5 899 48.2
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 7.5e-225 785.4 612 64.4
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.7e-224 783.1 1540 35.3
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.5e-212 744.6 1562 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.7e-208 731.1 1555 33.6
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.2e-208 730.7 847 49.6
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 6.6e-197 692.6 1430 34.4
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 8.6e-197 692.2 605 59.7
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 5.1e-189 666.4 603 56.4
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.0e-185 654.4 581 58.3
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.6e-179 633.6 782 45.0
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 2.0e-169 601.3 847 42.6
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 4.0e-162 577.0 712 46.3
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.0e-153 548.1 914 38.8
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.2e-150 538.9 611 51.2
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 2.0e-140 505.0 1420 29.6
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 4.2e-135 487.3 435 60.0
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 2.6e-108 398.3 444 50.2
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 6.3e-107 393.7 360 56.7
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 7.5e-100 370.2 316 62.7
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 6.4e-83 313.9 270 62.2
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.1e-79 303.1 345 49.9
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 3.1e-77 295.0 245 65.3
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.4e-74 285.4 256 59.8
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 7.3e-71 273.9 368 41.3
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.6e-71 273.5 331 45.0
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 8.1e-62 243.8 300 45.0
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 5.3e-61 241.1 1354 23.7
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 2.0e-60 239.2 203 58.1
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.1e-58 233.4 191 59.2
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 1.6e-54 219.5 209 53.1
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 2.0e-52 212.6 170 58.8
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 9.9e-52 210.3 1124 25.0
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 9.3e-50 203.8 699 27.2
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 2.7e-49 202.2 209 48.8
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.0e-48 198.7 178 55.1
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 6.7e-48 197.6 190 57.4
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 2.9e-35 155.6 94 73.4
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 8.4e-35 154.1 163 49.7
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.2e-33 150.2 151 49.7
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 1.8e-32 146.4 109 62.4
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 2.0e-28 132.9 157 44.6
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.1e-26 127.1 119 52.1
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 2.5e-26 125.9 105 61.0
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 2.1e-25 122.9 295 32.5
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 6.1e-25 121.3 78 69.2
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 3.3e-23 115.5 75 69.3
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 4.8e-22 111.7 115 46.1
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 8.8e-16 90.9 86 50.0
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.8e-13 83.2 64 60.9
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 3.1e-13 82.4 70 62.9
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 9.1e-13 80.9 63 65.1
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 9.1e-13 80.9 63 65.1
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.2e-12 80.5 97 46.4
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 1.2e-12 80.5 52 75.0
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 3.5e-12 79.0 89 49.4
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 7.7e-12 77.8 63 68.3
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 7.7e-12 77.8 74 55.4
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.3e-11 77.0 63 63.5
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.8e-11 75.5 55 70.9
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.1e-10 73.9 58 69.0
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 2.5e-10 72.8 70 58.6
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-08 67.4 54 48.1
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 9.7e-07 60.8 35 71.4


User provided reference genes

Program Settings