Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 0.0e+00 1087.4 534 100.0
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.3e-295 1017.7 536 92.7
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 6.8e-293 1010.0 536 92.2
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 3.0e-288 994.6 534 90.1
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 2.5e-287 991.5 534 89.3
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 5.6e-287 990.3 534 89.0
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 3.6e-286 987.6 534 88.2
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.8e-285 985.3 534 88.4
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 8.9e-285 983.0 534 88.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 2.6e-284 981.5 534 89.1
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.6e-284 981.5 534 88.0
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 3.4e-284 981.1 534 89.1
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 7.6e-284 979.9 534 88.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 9.9e-284 979.5 534 88.6
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 4.9e-283 977.2 534 88.6
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 4.9e-283 977.2 534 88.6
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.1e-282 976.1 528 88.8
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 2.4e-282 974.9 534 88.0
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 7.1e-282 973.4 534 88.0
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.7e-281 971.5 534 87.5
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.3e-280 968.4 534 86.9
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-279 966.1 534 86.7
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.9e-279 965.3 534 87.3
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.5e-279 964.9 534 86.7
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.5e-279 964.9 534 87.3
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.5e-279 964.9 534 86.7
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 4.3e-279 964.1 534 86.3
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 4.3e-279 964.1 534 87.1
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 5.6e-279 963.8 534 87.1
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 7.3e-279 963.4 534 87.1
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 9.6e-279 963.0 535 87.5
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 9.6e-279 963.0 534 86.9
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.8e-278 961.4 534 86.3
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 6.2e-278 960.3 534 86.1
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.4e-277 959.1 528 87.1
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.4e-277 959.1 534 86.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.4e-277 958.4 541 86.1
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 2.4e-277 958.4 534 86.5
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.0e-277 957.6 534 86.7
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.9e-277 956.8 534 86.3
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 9.0e-277 956.4 534 86.1
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 9.0e-277 956.4 534 86.1
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-276 956.1 534 86.3
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 2.0e-276 955.3 539 85.5
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.6e-276 954.9 534 86.1
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 3.4e-276 954.5 535 86.0
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 9.9e-276 953.0 534 86.0
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 9.9e-276 953.0 534 86.0
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.3e-275 952.6 534 85.4
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 2.9e-275 951.4 534 86.0
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.9e-275 951.4 534 86.1
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.8e-275 951.0 534 85.8
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.8e-275 951.0 534 85.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 3.8e-275 951.0 534 85.6
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.1e-274 949.5 534 85.4
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.4e-274 949.1 534 86.0
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.9e-274 948.7 528 85.2
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 4.6e-273 944.1 534 84.5
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.0e-272 941.4 535 85.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.0e-272 941.4 534 84.1
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.3e-270 936.0 534 82.6
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.1e-270 935.3 534 84.3
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 3.1e-269 931.4 534 85.4
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.5e-268 929.1 534 83.9
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.5e-268 929.1 534 84.8
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.5e-268 927.5 529 82.8
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.2e-266 921.4 535 82.6
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 5.5e-266 920.6 535 82.6
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 5.5e-266 920.6 534 83.0
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 5.5e-266 920.6 530 82.1
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.2e-265 919.5 496 91.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 2.1e-265 918.7 530 81.7
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 7.9e-265 916.8 534 81.5
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 7.9e-265 916.8 534 82.2
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 7.9e-265 916.8 530 81.7
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.8e-264 915.6 534 82.4
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.5e-263 912.5 535 82.4
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.5e-263 911.8 535 82.1
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 4.3e-263 911.0 534 81.8
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 4.3e-263 911.0 534 81.5
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 5.6e-263 910.6 530 82.3
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 7.4e-263 910.2 534 81.8
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.1e-262 908.7 534 80.7
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 8.2e-262 906.7 534 80.5
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 8.2e-262 906.7 536 81.0
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.8e-261 905.6 534 80.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.4e-261 905.2 528 80.7
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 3.1e-261 904.8 535 81.3
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 3.1e-261 904.8 527 81.8
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 4.0e-261 904.4 534 81.6
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 4.0e-261 904.4 535 81.9
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 5.3e-261 904.0 534 81.6
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 81.9
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 9.0e-261 903.3 535 82.1
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.2e-260 902.9 535 80.6
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.8e-259 897.9 530 81.5
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 6.5e-259 897.1 527 81.4
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 1.1e-258 896.3 534 80.7
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.9e-258 895.6 535 81.1
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 4.2e-258 894.4 527 80.8
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 7.9e-257 890.2 527 80.3
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.0e-256 889.8 551 78.4
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.9e-256 887.9 681 67.4
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.1e-255 886.3 551 78.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.5e-255 885.9 529 79.6
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.7e-255 884.0 528 80.9
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 7.4e-255 883.6 527 79.5
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.1e-253 879.8 529 80.2
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 2.6e-252 875.2 494 86.0
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.8e-251 871.3 493 86.4
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 8.5e-251 870.2 534 80.1
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 8.2e-246 853.6 665 66.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.1e-237 824.7 558 71.7
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.7e-235 819.3 538 73.6
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.1e-229 797.0 532 69.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 5.9e-228 794.3 524 71.0
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.2e-225 786.6 529 70.5
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 7.5e-223 777.3 525 70.7
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.6e-217 759.6 535 72.5
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 8.3e-214 747.3 534 65.2
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.0e-211 740.3 530 64.7
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 6.1e-209 731.1 440 82.3
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.0e-208 728.8 403 85.1
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 2.9e-203 712.2 536 63.4
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.6e-196 688.3 524 63.2
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 6.6e-195 684.5 497 66.6
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 5.2e-192 674.9 363 87.9
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 5.4e-189 664.8 495 69.7
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.4e-181 639.4 421 75.5
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 6.9e-168 594.7 709 51.1
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 1.6e-145 520.4 299 83.6
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 7.9e-140 501.5 538 51.9
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 5.7e-130 468.8 311 74.3
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.4e-120 437.6 536 46.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 3.0e-107 393.3 261 74.3
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 5.7e-106 389.0 411 51.3
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 9.8e-82 308.5 184 80.4
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 2.3e-70 270.8 147 87.8
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.2e-60 238.4 148 75.0
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.9e-45 188.0 133 69.2
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.9e-45 188.0 109 87.2
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.2e-41 174.5 222 44.1
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.7e-38 162.5 95 80.0
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.5e-34 151.8 110 70.9
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 2.6e-34 151.0 93 78.5
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 5.7e-21 106.7 94 63.8
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.0e-18 98.2 137 47.4
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 3.2e-16 90.9 45 91.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 2.3e-14 84.7 53 77.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 3.3e-13 80.9 44 88.6
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 3.3e-13 80.9 44 88.6
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 4.3e-13 80.5 45 84.4
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.2e-10 72.4 48 77.1
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.3e-09 68.9 78 59.0
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 1.1e-08 65.9 39 79.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 1.1e-08 65.9 39 79.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 1.1e-08 65.9 39 79.5
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 4.7e-07 60.5 47 59.6
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 78.4
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 78.4
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 1.0e-06 59.3 45 62.2
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 1.4e-06 58.9 207 25.1
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.4e-06 58.9 41 68.3
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 3.0e-06 57.8 208 25.5
VMungo0540G1605 Vigna mungo HOM05D001661 ORTHO05D001575 5.1e-06 57.0 101 34.7
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 8.8e-06 56.2 100 37.0
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 8.8e-06 56.2 194 25.3


User provided reference genes

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