Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 2.8e-283 978.0 523 100.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.3e-232 809.7 529 80.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.4e-226 788.9 540 76.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 7.1e-226 787.3 558 75.1
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 6.2e-190 667.9 459 75.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 6.0e-185 651.4 459 73.6
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.3e-182 643.7 468 72.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.8e-181 639.8 459 73.2
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.2e-180 637.1 459 73.0
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.9e-180 634.8 459 73.2
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.8e-179 632.1 453 72.2
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.8e-174 615.1 460 72.6
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 8.2e-174 614.4 472 71.6
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.2e-174 614.4 460 71.5
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.1e-173 614.0 461 74.8
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 6.9e-173 611.3 462 69.5
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.5e-172 610.1 459 69.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 5.0e-171 605.1 472 67.8
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.5e-171 604.4 461 68.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 9.4e-170 600.9 461 72.5
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.0e-168 595.9 480 66.5
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.1e-168 595.1 450 69.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.5e-167 593.6 459 71.7
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.7e-166 590.1 463 69.1
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.6e-164 582.8 459 66.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 5.0e-163 578.6 459 65.1
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 8.5e-163 577.8 461 69.6
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.2e-162 575.5 452 67.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.2e-161 573.9 488 63.7
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.2e-161 573.9 461 69.2
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.6e-161 573.5 465 67.7
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.4e-159 565.5 459 66.9
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 9.7e-159 564.3 431 67.7
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 9.7e-159 564.3 472 66.5
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.2e-158 563.1 452 65.0
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-158 562.8 460 65.4
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.3e-158 561.6 453 64.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.8e-157 560.1 459 66.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.1e-157 558.9 455 68.6
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.5e-156 555.4 460 64.8
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.9e-156 555.1 446 65.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.7e-155 553.5 460 63.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.4e-154 547.7 491 60.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.7e-153 546.2 457 62.4
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.7e-153 545.4 460 62.8
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.1e-153 545.0 482 61.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 8.0e-153 544.7 460 63.0
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.8e-152 543.5 463 62.4
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.0e-152 542.7 466 62.4
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 6.7e-152 541.6 460 63.0
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-151 540.8 478 60.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.5e-151 540.4 466 62.9
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.0e-151 540.0 454 62.8
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.4e-151 538.9 481 61.5
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 7.5e-151 538.1 455 63.5
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.7e-151 537.7 481 61.7
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 4.8e-150 535.4 461 61.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.4e-149 533.9 460 62.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-148 530.0 436 64.4
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.5e-148 528.9 459 61.4
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 2.9e-147 526.2 453 65.3
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.5e-147 524.6 439 62.4
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.2e-146 522.7 462 63.0
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.1e-145 520.0 440 64.1
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.7e-145 519.6 460 61.5
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.1e-145 518.5 453 59.6
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.4e-144 517.3 465 60.6
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.8e-144 516.9 461 63.3
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.3e-144 516.5 474 60.1
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.0e-144 516.2 453 59.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 5.2e-144 515.4 470 58.3
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.0e-143 513.5 474 59.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.4e-143 512.7 458 59.6
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.4e-143 512.7 451 60.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.7e-142 510.4 453 59.6
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.3e-142 508.4 457 59.7
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.1e-141 507.7 405 66.9
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.8e-141 506.9 458 60.0
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.7e-140 503.1 474 57.8
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.7e-139 500.4 445 60.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.3e-139 500.0 461 62.3
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.8e-139 499.2 453 57.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 8.6e-139 498.0 460 60.7
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 8.6e-139 498.0 434 62.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.5e-138 497.3 498 56.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.5e-138 495.4 440 61.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.6e-137 493.8 432 61.6
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 8.0e-137 491.5 465 58.9
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-136 491.1 456 58.1
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.4e-136 490.7 442 63.3
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.4e-135 485.7 577 49.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.4e-135 485.7 469 59.1
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 5.7e-135 485.3 401 66.1
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 9.8e-135 484.6 466 56.2
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 9.8e-135 484.6 457 60.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 4.9e-134 482.3 501 55.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.1e-133 479.6 510 56.1
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 9.2e-133 478.0 419 62.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.9e-130 470.3 454 56.8
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 3.3e-130 469.5 454 56.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.1e-129 466.8 458 56.8
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.4e-128 464.2 452 55.5
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-128 463.0 510 52.7
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 4.0e-128 462.6 450 58.2
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.0e-128 462.6 510 52.7
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 5.8e-127 458.8 446 54.9
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.5e-127 458.4 388 62.6
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 9.8e-127 458.0 454 55.5
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.2e-126 456.8 455 55.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.9e-126 455.7 454 55.5
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 6.4e-126 455.3 468 56.8
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-125 454.5 400 58.5
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-125 454.1 454 58.1
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.9e-125 453.8 468 54.7
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.2e-125 453.0 443 54.6
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 9.2e-125 451.4 444 56.1
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.2e-125 451.4 460 58.5
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.0e-124 450.3 455 54.7
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.7e-124 449.9 436 58.3
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-124 449.1 455 54.5
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.3e-123 447.6 455 54.7
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 3.9e-123 446.0 453 55.0
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 5.6e-122 442.2 452 58.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 7.3e-122 441.8 468 54.9
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 6.8e-120 435.3 449 56.8
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 3.4e-119 433.0 441 53.5
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 9.5e-114 414.8 460 51.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 9.9e-111 404.8 462 50.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.1e-104 383.3 464 50.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.4e-103 379.8 449 51.2
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.4e-101 373.6 475 46.9
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.6e-100 369.4 391 55.5
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 9.9e-95 351.7 215 76.7
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.9e-95 351.7 215 77.2
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.1e-93 348.2 450 44.0
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 7.1e-93 345.5 444 47.1
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.1e-92 344.0 459 47.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 6.0e-92 342.4 410 48.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 8.7e-91 338.6 380 47.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.9e-85 320.9 348 49.7
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.7e-84 317.0 367 50.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.0e-83 313.5 449 45.4
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.5e-82 311.2 343 48.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.6e-81 307.8 328 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 5.3e-80 302.8 309 50.2
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.3e-80 302.8 221 62.9
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 4.5e-71 273.1 175 74.3
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-55 221.9 272 55.1
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.0e-54 216.5 155 71.0
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-51 208.8 133 71.4
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 5.1e-51 206.5 216 57.4
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.7e-41 173.7 368 33.7
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.2e-38 164.5 253 42.7
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.2e-36 158.7 259 32.8
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 5.7e-34 149.8 95 72.6
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.3e-33 146.0 190 36.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 6.1e-28 129.8 228 42.5
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 5.4e-24 116.7 75 66.7
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.5e-23 113.6 70 71.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.4e-16 92.0 88 58.0
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.4e-16 91.3 231 28.1
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 9.2e-16 89.4 55 70.9
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 6.6e-14 83.2 45 88.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.5e-10 72.0 98 42.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.7e-09 68.6 74 47.3
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 8.3e-09 66.2 109 34.9


User provided reference genes

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