Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 3.7e-241 837.8 423 100.0
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.8e-147 526.6 422 62.8
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 3.1e-147 525.8 422 62.6
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 3.1e-147 525.8 423 60.8
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 5.3e-147 525.0 422 62.3
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 6.9e-147 524.6 422 62.3
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.6e-146 522.7 422 62.3
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 4.5e-146 521.9 423 60.8
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-145 520.8 421 61.0
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.8e-145 518.8 421 61.0
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 3.8e-145 518.8 423 61.9
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 3.8e-145 518.8 422 61.8
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 4.9e-145 518.5 422 62.1
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.4e-144 516.9 423 62.4
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.4e-144 516.9 422 61.8
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.9e-144 516.5 422 61.4
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 1.9e-144 516.5 423 61.2
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 3.2e-144 515.8 423 60.3
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 3.2e-144 515.8 422 61.1
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 4.2e-144 515.4 422 61.1
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 7.1e-144 514.6 414 61.6
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 7.1e-144 514.6 422 61.6
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 9.3e-144 514.2 422 60.9
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.3e-144 514.2 421 60.8
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-143 513.1 411 61.3
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 2.7e-143 512.7 423 61.0
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 3.5e-143 512.3 423 61.0
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.9e-143 511.1 422 61.4
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 7.9e-143 511.1 423 61.2
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 1.0e-142 510.8 423 61.0
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 1.0e-142 510.8 423 60.8
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 1.0e-142 510.8 422 60.7
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.3e-142 510.4 423 61.2
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.3e-142 510.4 423 60.8
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 3.0e-142 509.2 422 60.9
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-142 508.8 435 58.9
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 3.9e-142 508.8 422 60.9
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 3.9e-142 508.8 423 59.8
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 5.1e-142 508.4 420 62.1
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 6.7e-142 508.1 422 60.4
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 6.7e-142 508.1 422 61.1
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 6.7e-142 508.1 422 60.2
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.1e-141 507.3 422 60.2
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.5e-141 506.9 422 60.4
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 1.5e-141 506.9 423 60.0
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-141 506.5 423 59.3
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 4.3e-141 505.4 423 60.3
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 4.3e-141 505.4 422 60.7
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 7.4e-141 504.6 422 60.7
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.6e-140 503.4 423 59.1
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 2.8e-140 502.7 423 60.0
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.7e-140 502.3 417 60.4
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 3.7e-140 502.3 422 59.7
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 6.3e-140 501.5 422 60.4
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 6.3e-140 501.5 423 61.2
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.1e-139 500.7 421 60.3
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.4e-139 500.4 423 59.8
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 1.4e-139 500.4 421 58.4
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.4e-139 500.4 422 59.7
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.4e-139 500.4 422 59.5
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 1.8e-139 500.0 417 60.4
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 6.9e-139 498.0 423 60.5
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 6.9e-139 498.0 423 58.4
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 9.0e-139 497.7 417 60.0
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.6e-138 496.1 423 59.6
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 5.9e-138 495.0 423 59.3
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 5.9e-138 495.0 423 57.4
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.0e-137 494.2 417 60.4
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 1.3e-137 493.8 417 59.7
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 2.9e-137 492.7 447 57.5
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 2.9e-137 492.7 423 59.3
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 3.8e-137 492.3 423 59.1
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.1e-136 490.7 418 59.3
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 1.1e-136 490.7 418 59.3
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.4e-136 490.3 418 59.3
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.4e-136 490.3 418 59.3
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 4.2e-136 488.8 418 59.3
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 4.2e-136 488.8 423 58.6
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 5.5e-136 488.4 418 58.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 5.5e-136 488.4 418 58.6
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 5.5e-136 488.4 418 58.6
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 5.5e-136 488.4 418 58.6
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 5.5e-136 488.4 423 57.7
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 7.2e-136 488.0 419 58.5
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 7.2e-136 488.0 413 59.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.2e-135 487.3 418 58.6
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.6e-135 486.9 423 57.0
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.6e-135 486.9 418 58.4
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-135 486.9 417 58.3
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.1e-135 486.5 418 58.9
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 2.7e-135 486.1 418 58.6
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 2.7e-135 486.1 418 58.6
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.7e-135 486.1 418 58.4
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.8e-134 483.4 420 58.1
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.3e-134 483.0 411 59.4
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 5.1e-134 481.9 435 57.5
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 5.1e-134 481.9 423 56.5
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-133 480.7 418 58.1
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.5e-133 480.3 421 57.5
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 7.4e-133 478.0 417 57.1
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 7.4e-133 478.0 469 54.6
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.8e-131 473.4 421 56.8
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 2.2e-129 466.5 420 56.4
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 2.1e-127 459.9 423 56.0
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 3.6e-127 459.1 422 56.2
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-126 457.2 416 55.3
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.1e-125 454.1 414 55.8
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.0e-125 453.4 423 55.1
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 4.4e-125 452.2 424 53.3
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 7.4e-125 451.4 422 56.6
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.7e-124 450.3 422 55.0
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 2.2e-124 449.9 422 55.5
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-124 449.5 406 54.4
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 4.8e-124 448.7 423 54.8
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.1e-123 447.6 431 54.5
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.4e-123 446.4 412 53.6
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.1e-123 444.5 412 54.9
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.2e-121 439.9 417 53.7
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 3.8e-121 439.1 411 54.7
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.5e-121 438.3 413 55.0
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.2e-120 436.0 440 53.4
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.7e-119 433.0 350 60.9
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 6.1e-119 431.8 411 55.5
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 8.0e-119 431.4 410 52.7
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.8e-118 430.3 422 55.2
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 5.2e-118 428.7 398 55.5
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.3e-116 424.1 609 41.4
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 8.2e-116 421.4 427 52.0
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.0e-115 418.3 473 49.5
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 9.1e-115 417.9 408 52.9
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.5e-114 415.6 413 50.6
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.2e-113 413.3 431 50.8
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 2.5e-112 409.8 364 57.4
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.5e-109 400.6 338 59.2
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 2.2e-108 396.7 340 60.0
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-107 394.0 399 50.6
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 7.0e-107 391.7 343 57.7
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.5e-104 384.0 347 55.3
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 3.6e-103 379.4 413 50.4
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.2e-101 374.4 310 60.0
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-95 353.2 413 47.7
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 1.0e-94 351.3 308 58.4
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 2.2e-92 343.6 440 46.6
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.4e-91 340.9 426 44.8
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.2e-91 338.2 281 59.8
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.2e-90 337.8 281 59.8
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 2.0e-82 310.5 234 64.5
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.4e-75 287.7 429 38.9
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.2e-69 268.1 433 36.7
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 1.5e-64 251.1 414 37.0
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 5.8e-61 239.2 252 49.2
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 2.1e-58 230.7 172 64.0
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 6.9e-54 215.7 198 57.1
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.4e-53 213.0 276 44.2
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.1e-46 191.8 240 45.0
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.5e-40 171.4 165 52.7
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 2.8e-39 167.2 155 54.8
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 4.0e-38 163.3 166 51.2
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 2.5e-32 144.1 213 40.8
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 2.8e-31 140.6 152 51.3
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 3.1e-30 137.1 161 45.3
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.6e-29 134.0 255 40.0
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 3.7e-23 113.6 83 65.1
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 7.2e-19 99.4 83 60.2
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 4.6e-18 96.7 96 53.1
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 2.8e-15 87.4 60 71.7
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 2.2e-12 77.8 82 48.8
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 2.1e-10 71.2 129 38.0
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 6.1e-10 69.7 55 52.7
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 6.1e-10 69.7 88 46.6
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 4.4e-08 63.5 49 59.2
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 5.7e-08 63.2 55 45.5
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.4e-06 58.5 61 47.5
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 1.4e-06 58.5 61 47.5
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.8e-06 58.2 155 25.8
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 5.3e-06 56.6 47 55.3


User provided reference genes

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