Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p031598 Quercus lobata HOM05D000494 ORTHO05D018141 1.7e-96 355.9 166 100.0
CiPaw.08G014400 Carya illinoinensis HOM05D000494 ORTHO05D000556 3.2e-39 165.6 117 69.2
Prupe.1G471100 Prunus persica HOM05D000494 ORTHO05D000556 1.1e-36 157.1 119 66.4
Actinidia13274 Actinidia chinensis HOM05D000494 ORTHO05D000556 2.1e-35 152.9 115 62.6
MD08G1140800 Malus domestica HOM05D000494 ORTHO05D000556 2.8e-35 152.5 121 65.3
TAR636G3256 Trochodendron aralioides HOM05D000494 ORTHO05D000556 4.8e-35 151.8 115 63.5
GSVIVG01035778001 Vitis vinifera HOM05D000494 ORTHO05D000556 1.1e-34 150.6 136 52.2
MD15G1117700 Malus domestica HOM05D000494 ORTHO05D000556 1.8e-34 149.8 121 64.5
Potri.006G248400 Populus trichocarpa HOM05D000494 ORTHO05D000556 2.4e-34 149.4 121 58.7
TAR625G1250 Trochodendron aralioides HOM05D000494 ORTHO05D000556 4.0e-34 148.7 121 61.2
Thecc.09G146600 Theobroma cacao HOM05D000494 ORTHO05D000556 2.6e-33 146.0 111 62.2
Potri.018G033000 Populus trichocarpa HOM05D000494 ORTHO05D000556 7.6e-33 144.4 119 57.1
PGR044G2549 Punica granatum HOM05D000494 ORTHO05D000556 1.7e-32 143.3 117 61.5
CSS0031483 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D000556 2.9e-32 142.5 117 59.8
MBI04_g08376_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D000556 4.9e-32 141.7 120 57.5
Atru.chr7.2346 Acer truncatum HOM05D000494 ORTHO05D018141 1.4e-31 140.2 100 69.0
Duzib168G1398 Durio zibethinus HOM05D000494 ORTHO05D000556 1.4e-31 140.2 110 60.9
FAN20G1133 Fragaria x ananassa HOM05D000494 ORTHO05D000556 1.9e-31 139.8 112 62.5
RcHm_v2.0_Chr6g0298921 Rosa chinensis HOM05D000494 ORTHO05D000556 2.5e-31 139.4 113 62.8
FAN24G3041 Fragaria x ananassa HOM05D000494 ORTHO05D000556 9.3e-31 137.5 112 62.5
Nn8g39318 Nelumbo nucifera HOM05D000494 ORTHO05D000556 1.6e-30 136.7 116 59.5
Haze_21607 Corylus avellana HOM05D000494 ORTHO05D000556 2.1e-30 136.3 119 60.5
Actinidia14633 Actinidia chinensis HOM05D000494 ORTHO05D000556 7.9e-30 134.4 119 54.6
FAN27G0323 Fragaria x ananassa HOM05D000494 ORTHO05D000556 7.9e-30 134.4 113 62.8
FAN15G0105 Fragaria x ananassa HOM05D000494 ORTHO05D000556 3.9e-29 132.1 113 61.9
Manes.03G018800 Manihot esculenta HOM05D000494 ORTHO05D000556 5.1e-29 131.7 111 58.6
Cfa013202 Carpinus fangiana HOM05D000494 ORTHO05D000556 1.1e-28 130.6 119 58.0
Hund03008 Selenicereus undatus HOM05D000494 ORTHO05D000556 1.9e-28 129.8 115 56.5
Gohir.D05G010500 Gossypium hirsutum HOM05D000494 ORTHO05D000556 4.3e-28 128.6 110 55.5
CSS0021072 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D018141 5.7e-28 128.3 111 55.0
Gorai.009G010900 Gossypium raimondii HOM05D000494 ORTHO05D000556 5.7e-28 128.3 110 55.5
EL10Ac2g02558 Beta vulgaris HOM05D000494 ORTHO05D000556 2.1e-27 126.3 114 55.3
SalBow4G2276 Salvia bowleyana HOM05D000494 ORTHO05D000556 2.8e-27 125.9 130 44.6
AUR62024858 Chenopodium quinoa HOM05D000494 ORTHO05D000556 3.7e-27 125.6 111 58.6
Ciclev10008648m.g Citrus clementina HOM05D000494 ORTHO05D000556 4.8e-27 125.2 115 54.8
Lalb_Chr08g0243871 Lupinus albus HOM05D000494 ORTHO05D000556 4.8e-27 125.2 119 51.3
THA.LOC104818629 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 4.8e-27 125.2 119 53.8
AUR62032363 Chenopodium quinoa HOM05D000494 ORTHO05D000556 6.2e-27 124.8 111 58.6
Sc09g0008730 Simmondsia chinensis HOM05D000494 ORTHO05D000556 6.2e-27 124.8 115 54.8
TWI34G0349 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 1.4e-26 123.6 112 58.0
Gohir.A05G009800 Gossypium hirsutum HOM05D000494 ORTHO05D000556 2.4e-26 122.9 110 54.5
Rhsim07G0148900 Rhododendron simsii HOM05D000494 ORTHO05D000556 5.3e-26 121.7 121 51.2
MSTRG.25863 Avicennia marina HOM05D000494 ORTHO05D000556 6.9e-26 121.3 142 42.3
Carub.0004s0539 Capsella rubella HOM05D000494 ORTHO05D000556 6.9e-26 121.3 117 50.4
Glyma.04G069900 Glycine max HOM05D000494 ORTHO05D000556 6.9e-26 121.3 116 54.3
AL4G17090 Arabidopsis lyrata HOM05D000494 ORTHO05D000556 9.0e-26 120.9 118 50.8
Thhalv10000194m.g Eutrema salsugineum HOM05D000494 ORTHO05D000556 9.0e-26 120.9 121 50.4
Ca_15709_v3 Cicer arietinum L. HOM05D000494 ORTHO05D000556 1.2e-25 120.6 115 52.2
Sp4g05180 Schrenkiella parvula HOM05D000494 ORTHO05D000556 1.5e-25 120.2 123 50.4
arahy.Tifrunner.gnm1.ann1.24PQDM Arachis hypogaea HOM05D000494 ORTHO05D000556 2.0e-25 119.8 115 53.0
PSO017G6808 Papaver somniferum HOM05D000494 ORTHO05D000556 2.0e-25 119.8 118 55.1
PSO170G2362 Papaver somniferum HOM05D000494 ORTHO05D000556 2.6e-25 119.4 118 53.4
arahy.Tifrunner.gnm1.ann1.84MHXV Arachis hypogaea HOM05D000494 ORTHO05D000556 3.4e-25 119.0 115 53.0
Lj1g0002787 Lotus japonicus HOM05D000494 ORTHO05D000556 7.6e-25 117.9 95 56.8
COL.COLO4_24025 Corchorus olitorius HOM05D000494 ORTHO05D000556 1.0e-24 117.5 110 55.5
Aa31sc251G60 Aethionema arabicum HOM05D000494 ORTHO05D000556 1.3e-24 117.1 126 50.0
CARHR115680 Cardamine hirsuta HOM05D000494 ORTHO05D000556 1.3e-24 117.1 117 53.0
AT2G25620 Arabidopsis thaliana HOM05D000494 ORTHO05D000556 2.2e-24 116.3 119 49.6
SGA_v2.0_scaffold448G51774 Striga asiatica HOM05D000494 ORTHO05D000556 3.8e-24 115.5 115 47.8
Medtr3g107880 Medicago truncatula HOM05D000494 ORTHO05D000556 5.0e-24 115.2 111 55.0
Aqoxy7G01924 Aquilegia oxysepala HOM05D000494 ORTHO05D000556 8.4e-24 114.4 124 50.0
Glyma.06G071900 Glycine max HOM05D000494 ORTHO05D000556 1.1e-23 114.0 116 50.9
MSTRG.11747 Avicennia marina HOM05D000494 ORTHO05D000556 1.4e-23 113.6 116 47.4
Lalb_Chr23g0268851 Lupinus albus HOM05D000494 ORTHO05D000556 1.9e-23 113.2 118 52.5
Atru.chr7.1776 Acer truncatum HOM05D000494 ORTHO05D018141 5.5e-23 111.7 111 54.1
Cc11_g01410 Coffea canephora HOM05D000494 ORTHO05D000556 3.5e-22 109.0 123 48.0
Phvul.009G096300 Phaseolus vulgaris HOM05D000494 ORTHO05D000556 3.5e-22 109.0 110 50.9
Psat5g027080 Pisum sativum HOM05D000494 ORTHO05D000556 6.1e-22 108.2 111 50.5
Migut.A00289 Erythranthe guttata HOM05D000494 ORTHO05D000556 7.9e-22 107.8 116 44.8
Sabra18G0033800 Salix brachista HOM05D000494 ORTHO05D000556 1.0e-21 107.5 123 46.3
Sabra06G0194400 Salix brachista HOM05D000494 ORTHO05D000556 2.3e-21 106.3 70 61.4
VMungo1309G2622 Vigna mungo HOM05D000494 ORTHO05D000556 2.3e-21 106.3 110 51.8
ECA246G1806 Erigeron canadensis HOM05D000103 ORTHO05D000049 6.7e-21 104.8 117 43.6
DCAR_001032 Daucus carota HOM05D000494 ORTHO05D000556 1.1e-20 104.0 108 48.1
BcaB08g35203 Brassica carinata HOM05D000494 ORTHO05D000556 1.9e-20 103.2 120 47.5
BcaC07g40852 Brassica carinata HOM05D000494 ORTHO05D000556 2.5e-20 102.8 111 45.9
Lj7A715T36 Lonicera japonica HOM05D000494 ORTHO05D000556 3.3e-20 102.4 87 51.7
THA.LOC104803824 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 3.3e-20 102.4 119 46.2
A09p55520 Brassica napus HOM05D000494 ORTHO05D000556 5.7e-20 101.7 113 46.9
BraA09t40954Z Brassica rapa HOM05D000494 ORTHO05D000556 5.7e-20 101.7 113 46.9
ATR0083G027 Amborella trichopoda HOM05D000494 ORTHO05D000556 9.7e-20 100.9 143 42.0
Nitab4.5_0003128g0020 Nicotiana tabacum HOM05D000494 ORTHO05D000556 3.1e-18 95.9 110 44.5
C08p38500 Brassica napus HOM05D000494 ORTHO05D000556 4.1e-18 95.5 113 44.2
Nitab4.5_0004611g0010 Nicotiana tabacum HOM05D000494 ORTHO05D000556 4.1e-18 95.5 110 43.6
BolC8t51422H Brassica oleracea HOM05D000494 ORTHO05D000556 1.5e-17 93.6 113 43.4
PGSC0003DMG400026085 Solanum tuberosum HOM05D000494 ORTHO05D000556 2.0e-17 93.2 115 43.5
CAN.G199.32 Capsicum annuum HOM05D000494 ORTHO05D000556 4.5e-17 92.0 111 45.0
Eucgr.C02836 Eucalyptus grandis HOM05D000494 ORTHO05D000556 5.9e-17 91.7 86 48.8
HPP92_023334 Vanilla planifolia HOM05D000494 ORTHO05D000556 5.9e-17 91.7 123 43.9
Zm00001eb385910 Zea mays HOM05D000494 ORTHO05D000556 5.9e-17 91.7 136 36.8
Dinv30198 Davidia involucrata HOM05D000494 ORTHO05D000556 7.7e-17 91.3 85 60.0
Sopen06g024070 Solanum pennellii HOM05D000494 ORTHO05D000556 7.7e-17 91.3 115 41.7
Solyc06g065610.3 Solanum lycopersicum HOM05D000494 ORTHO05D000556 1.0e-16 90.9 115 41.7
Peaxi162Scf00075g02123 Petunia axillaris HOM05D000494 ORTHO05D000556 6.5e-16 88.2 110 39.1
HanXRQChr08g0236301 Helianthus annuus HOM05D000494 ORTHO05D000556 1.1e-15 87.4 117 40.2
CDE06G1103 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 1.9e-15 86.7 52 71.2
PGR142G3638 Punica granatum HOM05D000494 ORTHO05D024157 4.2e-15 85.5 67 55.2
Lsat_1_v5_gn_5_32440 Lactuca sativa HOM05D000494 ORTHO05D000556 7.2e-15 84.7 53 64.2
Oeu035825.1 Olea europaea HOM05D000494 ORTHO05D023310 7.2e-15 84.7 68 50.0
CDE04G2007 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 3.6e-14 82.4 52 65.4
Ah.12g063640 Amaranthus hybridus HOM05D000494 ORTHO05D018141 1.8e-13 80.1 55 67.3
Os06g0597200 Oryza sativa ssp. japonica HOM05D000494 ORTHO05D000556 6.7e-13 78.2 95 37.9
unitig_748.g7369 Utricularia gibba HOM05D000494 ORTHO05D000556 7.7e-09 64.7 63 46.0
MBI15_g25664_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D000556 5.0e-08 62.0 71 38.0
TWI63G0690 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 8.5e-08 61.2 45 68.9
SEGI_16641 Sequoiadendron giganteum HOM05D000494 ORTHO05D000556 3.2e-07 59.3 119 33.6
Zm00001eb192230 Zea mays HOM05D000494 ORTHO05D000556 4.2e-07 58.9 50 42.0
GSVIVG01022296001 Vitis vinifera HOM05D000494 ORTHO05D000556 7.2e-07 58.2 106 31.1
Solyc07g007220.3 Solanum lycopersicum HOM05D000494 ORTHO05D000556 1.2e-06 57.4 73 31.5
TAR625G0723 Trochodendron aralioides HOM05D000494 ORTHO05D000556 1.6e-06 57.0 114 27.2
SEGI_13617 Sequoiadendron giganteum HOM05D000494 ORTHO05D000556 2.1e-06 56.6 90 36.7
SEGI_19270 Sequoiadendron giganteum HOM05D000494 ORTHO05D000556 2.1e-06 56.6 90 36.7
Atru.chr13.100 Acer truncatum HOM05D000494 ORTHO05D000556 2.7e-06 56.2 106 33.0
Hma1.2p1_0182F.1_g080400 Hydrangea macrophylla HOM05D000494 ORTHO05D000556 3.6e-06 55.8 79 29.1
vmacro05216 Vaccinium macrocarpon HOM05D000494 ORTHO05D000556 3.6e-06 55.8 72 52.8
Sopen07g003270 Solanum pennellii HOM05D000494 ORTHO05D000556 4.7e-06 55.5 73 31.5
EL10Ac8g18808 Beta vulgaris HOM05D000494 ORTHO05D000556 6.1e-06 55.1 51 41.2
Hma1.2p1_0949F.1_g240630 Hydrangea macrophylla HOM05D000494 ORTHO05D000556 7.9e-06 54.7 52 40.4
Hund08319 Selenicereus undatus HOM05D001382 ORTHO05D018141 7.9e-06 54.7 48 56.2
Zm00001eb258010 Zea mays HOM05D000494 ORTHO05D000556 7.9e-06 54.7 48 39.6


User provided reference genes

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