Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.3e-240 834.7 449 100.0
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.6e-168 595.9 406 79.3
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 7.8e-165 584.3 450 71.8
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.2e-159 566.2 404 76.7
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 3.7e-159 565.5 405 76.3
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.8e-138 496.1 409 66.5
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.0e-136 490.0 410 66.3
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.3e-132 477.2 411 64.0
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.3e-132 476.5 411 64.2
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.5e-131 473.8 411 64.2
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.6e-131 471.9 411 63.7
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.6e-130 470.3 421 63.2
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 2.4e-129 466.5 417 64.0
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.5e-128 463.8 411 64.7
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.7e-127 460.3 424 62.7
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.4e-127 458.4 404 64.6
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.3e-124 450.7 404 64.1
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 3.9e-124 449.1 415 61.9
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 5.6e-123 445.3 407 63.9
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 7.4e-123 444.9 406 61.8
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 6.2e-122 441.8 410 62.7
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 4.0e-121 439.1 423 61.7
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 2.2e-119 433.3 408 61.0
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.9e-119 432.2 412 59.2
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 3.2e-118 429.5 417 60.9
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.6e-114 417.2 418 58.9
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 6.9e-113 411.8 414 59.4
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.4e-112 409.5 429 57.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 4.5e-112 409.1 407 57.2
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 4.5e-112 409.1 407 57.0
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.3e-111 407.5 429 55.7
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.3e-111 407.5 408 57.6
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.9e-111 406.4 413 58.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 5.0e-111 405.6 412 57.5
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 8.5e-111 404.8 413 56.4
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 4.6e-109 399.1 408 56.1
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.0e-108 397.9 414 57.2
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 2.3e-108 396.7 411 57.7
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 3.0e-108 396.4 408 56.9
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.1e-107 394.4 403 57.3
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 9.7e-107 391.3 466 53.2
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.7e-106 390.6 351 62.1
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 2.2e-106 390.2 350 62.0
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.1e-105 387.9 413 56.4
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.5e-104 384.0 406 56.4
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 2.6e-104 383.3 413 53.5
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 4.2e-102 375.9 405 56.3
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 9.4e-102 374.8 406 55.7
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.6e-101 374.0 405 56.0
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.1e-101 373.6 419 57.0
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.1e-101 373.6 427 54.8
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 1.0e-100 371.3 478 50.2
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.4e-100 370.9 303 67.7
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 3.9e-100 369.4 405 55.3
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 6.7e-100 368.6 307 65.5
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 7.4e-99 365.2 390 54.1
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.1e-97 361.3 405 53.6
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.4e-97 360.1 405 53.8
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 3.5e-96 356.3 286 66.8
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 4.5e-96 355.9 439 53.1
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 6.5e-95 352.1 433 51.3
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 2.1e-93 347.1 416 50.2
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.4e-92 344.4 290 64.8
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.0e-91 340.5 412 53.4
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.7e-90 337.4 412 52.9
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 2.9e-87 326.6 303 61.7
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 5.0e-87 325.9 645 38.6
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 8.5e-87 325.1 406 50.2
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 1.9e-86 323.9 406 48.8
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 5.5e-86 322.4 410 49.5
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.1e-85 320.5 447 50.6
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 2.3e-84 317.0 431 48.0
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 3.0e-84 316.6 260 65.8
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.7e-82 310.8 405 50.1
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 9.1e-81 305.1 421 48.2
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.0e-79 301.6 353 53.5
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 4.7e-77 292.7 349 52.1
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 6.1e-77 292.4 308 55.5
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.5e-75 287.7 362 51.4
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 2.8e-74 283.5 413 45.8
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.8e-73 280.8 329 54.4
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.1e-73 279.6 317 52.7
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 4.5e-72 276.2 310 53.5
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 5.9e-72 275.8 384 46.9
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 3.8e-71 273.1 430 44.4
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 6.6e-71 272.3 400 46.8
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 1.5e-70 271.2 401 47.9
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 8.0e-69 265.4 404 47.0
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 1.0e-68 265.0 376 50.3
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.3e-68 263.8 406 44.8
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 8.9e-68 261.9 325 51.1
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.2e-67 261.5 353 49.6
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 2.5e-62 243.8 361 45.4
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.5e-59 234.6 271 55.4
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.5e-59 234.6 329 45.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 4.4e-59 233.0 302 49.3
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 1.2e-53 214.9 340 43.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.4e-52 211.5 365 41.9
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 3.1e-52 210.3 406 40.4
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.5e-46 191.4 366 41.3
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.2e-45 188.3 284 45.1
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.2e-43 181.8 193 53.9
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 1.5e-43 181.4 414 37.2
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 2.6e-43 180.6 328 39.9
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 2.2e-42 177.6 324 40.1
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.9e-42 177.2 415 36.9
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 3.7e-42 176.8 424 36.8
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 8.3e-42 175.6 415 36.9
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 2.4e-41 174.1 414 37.2
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 3.2e-41 173.7 404 37.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 4.1e-41 173.3 411 36.3
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 7.1e-41 172.6 411 36.5
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 6.0e-40 169.5 413 36.6
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 8.6e-39 165.6 266 41.4
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.5e-38 164.9 403 35.5
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 2.5e-38 164.1 404 35.9
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-37 161.8 406 36.0
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.4e-36 157.5 411 35.5
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 5.2e-36 156.4 404 35.1
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 2.0e-35 154.5 412 35.9
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 4.9e-34 149.8 323 36.2
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 6.0e-32 142.9 123 61.8
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 6.9e-28 129.4 350 34.3
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 6.4e-26 122.9 251 39.8
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 7.1e-25 119.4 262 35.9
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.2e-24 118.6 199 43.7
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.8e-21 107.5 390 31.5
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.8e-20 104.8 389 30.8
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 4.0e-20 103.6 443 31.4
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.2e-19 102.1 394 30.5
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 1.2e-19 102.1 80 62.5
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.0e-19 101.3 131 48.9
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 5.4e-17 93.2 93 55.9
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 3.5e-16 90.5 411 28.2
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 7.9e-16 89.4 196 35.7
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 3.0e-15 87.4 181 35.9
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 1.9e-14 84.7 171 37.4
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 6.9e-12 76.3 99 44.4
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 2.0e-11 74.7 99 43.4
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 1.7e-10 71.6 60 58.3


User provided reference genes

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