Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 1437.6 732 100.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 3.3e-261 905.2 741 66.9
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.3e-257 893.3 839 60.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 2.9e-254 882.1 744 64.8
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 1.8e-251 872.8 737 64.0
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 2.9e-249 865.5 744 63.2
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 6.8e-243 844.3 728 62.5
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.4e-240 836.6 732 62.2
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 5.4e-240 834.7 734 62.3
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 6.6e-238 827.8 746 60.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 6.6e-238 827.8 731 62.0
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 2.5e-237 825.9 744 61.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.7e-233 813.1 747 60.1
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 7.3e-229 797.7 748 57.5
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 1.2e-228 797.0 740 58.6
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 8.9e-227 790.8 729 60.2
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 1.2e-226 790.4 730 60.5
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 6.4e-225 784.6 742 57.3
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 9.2e-224 780.8 740 56.9
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 4.6e-223 778.5 741 58.0
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 7.6e-218 761.1 751 57.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 3.5e-215 752.3 736 56.9
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 7.8e-215 751.1 733 58.0
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 8.7e-214 747.7 736 58.6
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.4e-211 740.3 734 56.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.3e-209 733.8 741 57.8
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 4.9e-209 731.9 739 55.3
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 4.2e-208 728.8 754 55.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 7.1e-208 728.0 798 53.6
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 7.9e-207 724.5 754 54.9
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 3.9e-206 722.2 733 55.8
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 7.4e-205 718.0 738 53.4
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 7.4e-205 718.0 731 55.4
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 3.7e-204 715.7 740 53.4
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 4.8e-204 715.3 731 55.7
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 8.1e-204 714.5 736 55.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.8e-203 713.4 757 54.4
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 9.9e-202 707.6 731 55.5
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 2.9e-201 706.1 751 53.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 1.2e-199 700.7 741 52.6
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 2.3e-198 696.4 740 52.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 1.9e-197 693.3 740 51.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 9.6e-197 691.0 744 52.7
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 8.2e-196 688.0 740 51.2
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 5.8e-194 681.8 741 52.0
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.5e-193 678.3 731 53.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 8.4e-193 677.9 742 52.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 8.4e-193 677.9 740 52.7
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.1e-192 677.6 740 51.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 2.5e-192 676.4 740 51.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.0e-190 671.0 733 51.8
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 8.7e-190 667.9 744 51.1
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 8.7e-190 667.9 729 51.4
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.5e-189 667.2 729 51.3
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 2.6e-186 656.4 760 50.8
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 5.9e-186 655.2 746 51.5
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.2e-185 653.3 757 50.5
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.4e-184 650.6 728 49.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 9.4e-184 647.9 781 50.4
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-183 647.5 760 49.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 5.7e-181 638.6 735 49.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 3.1e-179 632.9 732 48.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 6.9e-179 631.7 731 48.7
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.2e-178 630.9 763 49.4
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 3.4e-178 629.4 735 48.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 3.3e-173 612.8 735 48.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 3.1e-171 606.3 733 47.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.0e-170 603.6 737 47.6
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 4.8e-164 582.4 746 46.0
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.2e-154 551.2 740 44.9
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.0e-153 545.8 739 44.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 1.5e-152 544.3 775 43.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.1e-151 540.4 746 44.8
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.8e-150 537.3 737 44.6
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 3.8e-145 519.6 739 43.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 1.9e-144 517.3 534 52.4
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.5e-144 515.0 644 46.6
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 1.6e-143 514.2 356 75.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 3.6e-143 513.1 738 43.2
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 1.2e-133 481.5 358 69.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 3.2e-131 473.4 732 40.0
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.1e-126 458.4 547 49.5
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 8.9e-126 455.3 353 67.4
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 5.8e-125 452.6 358 63.7
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 6.4e-116 422.5 728 37.0
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.4e-115 420.6 360 64.7
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 8.1e-95 352.4 367 50.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.7e-89 332.8 323 56.7
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 1.1e-72 278.9 861 28.6
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 3.7e-71 273.9 804 29.4
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.9e-59 235.0 163 71.8
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.8e-57 228.4 300 45.3
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-56 225.3 305 43.6
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 5.7e-56 223.4 307 45.0
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 7.7e-53 213.0 191 57.6
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 1.5e-48 198.7 307 41.4
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 8.5e-44 183.0 706 26.5
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 6.5e-36 156.8 142 54.9
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 1.0e-33 149.4 339 33.6
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 7.5e-32 143.3 796 22.7
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 3.8e-28 131.0 120 56.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 4.4e-24 117.5 92 63.0
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 2.6e-16 91.7 76 63.2
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-11 75.9 58 62.1
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.2e-10 72.8 58 62.1
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 4.9e-07 60.8 48 62.5


User provided reference genes

Program Settings